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[bioontology-support] new Bio API

Darren Weber dlweber at stanford.edu
Tue Feb 25 06:42:41 PST 2014


Hi Sergey,

That's a good question, thanks!

The nearest you can get (at present) is by using the 'include' 
parameter, e.g.
http://data.bioontology.org/ontologies?include=all

However, we don't recommend that, because the system performance may 
suffer.  Rather, use that as an exploration tool and then use it to 
select specific properties that you want.  More information is available 
in the documentation at http://data.bioontology.org/documentation

Hope that helps,
Darren



On 2/25/14, 2:19 AM, Sergey Nikitin wrote:
> Hi Support,
>
>   In the old API the ontologies request returned a lot of information 
> about each item. We are trying to find a way to receive alomost the 
> same results with the new API.
>
>             In the new API one can receive an ontology list in json 
> format using URL: 
> http://data.bioontology.org/ontologies?apikey={api-key} 
> <http://data.bioontology.org/ontologies?apikey=%7Bapi-key%7D>
>
>   The result structures contain links to other objects, like:
>
>     {
>
>         "administeredBy": [
>
>             "http://data.bioontology.org/users/pjd"
>
>         ],
>
>  *
>      o
>
>    Is there a way to receive ontologies with data obtained by 
> following the links in one request? For example:
>
>     {
>
>         "administeredBy": [" <http://data.bioontology.org/users/pjd>
>
>           * username": "pjd",
>           * "email": "pdevries at wisc.edu",
>           * "role": [
>               o "LIBRARIAN"
>             ],
>           * "@id": "http://data.bioontology.org/users/pjd",
>           * "@type": "http://data.bioontology.org/metadata/User",
>          *
>
>             "@context": {
>               o "@vocab": "http://data.bioontology.org/metadata/"
>             }
>
>         ],
>
>
>  Perhaps, this is not the right approach? Then, what you recommend?
> https://bioportal.bioontology.org/ontologies loads pretty fast. We 
> want to achive the same result.
>
> Thanks,
> Sergey Nikitin
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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