Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Can't make "DELETE /provisional_classes/:provisional_class_id" work

Darren Weber dlweber at stanford.edu
Wed Feb 26 11:45:07 PST 2014


Hi Thomas,

Thanks for asking, the PATCH fix has been pushed to production.  Can you 
provide more details on what your doing?

Take care,
Darren



On 2/26/14, 9:05 AM, Thomas Rodenhausen wrote:
> Hi Darren,
>
> I noticed that DELETE now works fine.
> For PATCH I still have the originally reported problem. Is this a 
> known problem or am I maybe missing out on something?
>
>
> On Mon, Jan 27, 2014 at 9:10 AM, Thomas Rodenhausen 
> <thomas.rodenhausen at gmail.com <mailto:thomas.rodenhausen at gmail.com>> 
> wrote:
>
>     Thanks.
>
>     Just want to add the issue with PATCH below, which seems to be
>     similar.
>
>     3 > GET
>     http://data.bioontology.org/provisional_classes/737af2a0-6751-0131-e6d9-005056010074
>     3 > Accept: application/json
>     3 > Authorization: apikey token=...
>
>     4 < 200
>     4 < Age: 60
>     4 < Cache-Control: public, max-age=60
>     4 < Connection: close
>     4 < Content-Length: 590
>     4 < Content-Type: application/json;charset=utf-8
>     4 < Date: Mon, 27 Jan 2014 16:04:24 GMT
>     4 < Last-Modified: Fri, 24 Jan 2014 18:17:27 GMT
>     4 < Status: 200 OK
>     4 < Vary: User-Agent, Accept, Accept-Language, Accept-Encoding,
>     Authorization, NCBO-Slice
>     4 < X-Content-Digest: 44212eef4fe92be0bcc402c637645f5e801d14a8
>     4 < X-Content-Type-Options: nosniff
>     4 < X-Rack-Cache: stale, valid, store
>     {"label":"test2","synonym":[],"definition":[],"subclassOf":null,"creator":"http://data.bioontology.org/users/thomas.rodenhausen","created":"2014-01-24T10:15:38-08:00","permanentId":null,"noteId":null,"ontology":[],"@id":"http://data.bioontology.org/provisional_classes/737af2a0-6751-0131-e6d9-005056010074","@type":"http://data.bioontology.org/metadata/ProvisionalClass","@context":{"@vocab":"http://data.bioontology.org/metadata/","creator":{"@id":"http://data.bioontology.org/metadata/User","@type":"@id"},"ontology":{"@id":"http://data.bioontology.org/metadata/Ontology","@type":"@id"}}}
>
>     5 > POST
>     http://data.bioontology.org/provisional_classes/737af2a0-6751-0131-e6d9-005056010074
>     5 > Accept: application/json
>     5 > Authorization: apikey token=...
>     5 > Content-Type: application/json
>     5 > X-HTTP-Method-Override: PATCH
>     {"label":"test3","synonym":[],"definition":[],"subclassOf":null,"creator":"http://data.bioontology.org/users/thomas.rodenhausen","created":"2014-01-24T10:15:38-08:00","permanentId":null,"noteId":null,"ontology":[],"@id":"http://data.bioontology.org/provisional_classes/737af2a0-6751-0131-e6d9-005056010074","@type":"http://data.bioontology.org/metadata/ProvisionalClass"}
>
>     6 < 500
>     6 < Connection: close
>     6 < Content-Length: 30
>     6 < Content-Type: text/html;charset=utf-8
>     6 < Date: Mon, 27 Jan 2014 16:04:24 GMT
>     6 < Status: 500 Internal Server Error
>     6 < X-Content-Type-Options: nosniff
>     6 < X-Frame-Options: SAMEORIGIN
>     6 < X-Rack-Cache: invalidate, pass
>     6 < X-XSS-Protection: 1; mode=block
>     <h1>Internal Server Error</h1>
>
>
>     On Thu, Jan 23, 2014 at 1:47 PM, Darren Weber
>     <dlweber at stanford.edu <mailto:dlweber at stanford.edu>> wrote:
>
>
>         Hi Thomas,
>
>         A fix for this should be available in the next release. 
>         Thanks for reporting the bug.
>
>         Take care,
>         Darren
>
>         PS, details of the fix are at
>         https://github.com/ncbo/ontologies_api/commit/0a0dddbfe7aec2db3d8c291bac5a1508351bea1c
>
>
>
>
>         On 1/23/14, 11:07 AM, Thomas Rodenhausen wrote:
>>         I had tried this before, it results in the same HTTP 500, see
>>         below.
>>         Also note that a GET for the URI returns a 404, that's why I
>>         had tried only the last part of the URI, which works at least
>>         for GET.
>>
>>         3 > DELETE
>>         http://data.bioontology.org/provisional_classes/http%3A%2F%2Fdata.bioontology.org%2Fprovisional_classes%2F4e3b6790-65eb-0131-7e69-005056010073
>>         3 > Accept: application/json
>>         3 > Authorization: apikey token=...
>>
>>         4 < 500
>>         4 < Connection: close
>>         4 < Content-Length: 30
>>         4 < Content-Type: text/html;charset=utf-8
>>         4 < Date: Thu, 23 Jan 2014 19:03:36 GMT
>>         4 < Status: 500 Internal Server Error
>>         4 < X-Content-Type-Options: nosniff
>>         4 < X-Frame-Options: SAMEORIGIN
>>         4 < X-Rack-Cache: invalidate, pass
>>         4 < X-XSS-Protection: 1; mode=block
>>         <h1>Internal Server Error</h1>
>>
>>         1 > GET
>>         http://data.bioontology.org/provisional_classes/http%3A%2F%2Fdata.bioontology.org%2Fprovisional_classes%2F4e3b6790-65eb-0131-7e69-005056010073
>>         1 > Accept: application/json
>>         1 > Authorization: apikey token=...
>>
>>         2 < 404
>>         2 < Age: 0
>>         2 < Cache-Control: public, max-age=60
>>         2 < Connection: close
>>         2 < Content-Length: 140
>>         2 < Content-Type: application/json;charset=utf-8
>>         2 < Date: Thu, 23 Jan 2014 19:05:27 GMT
>>         2 < Last-Modified: Wed, 22 Jan 2014 23:38:27 GMT
>>         2 < Status: 404 Not Found
>>         2 < Vary: User-Agent, Accept, Accept-Language,
>>         Accept-Encoding, Authorization, NCBO-Slice
>>         2 < X-Content-Digest: 2d9b8c551b17ead68f6a51e042464baab321c87a
>>         2 < X-Content-Type-Options: nosniff
>>         2 < X-Rack-Cache: miss, store
>>         {"errors":["Provisional class
>>         http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073
>>         not found"],"status":404}
>>
>>
>>
>>         On Thu, Jan 23, 2014 at 11:58 AM, Darren Weber
>>         <dlweber at stanford.edu <mailto:dlweber at stanford.edu>> wrote:
>>
>>
>>             Hi Thomas,
>>
>>             Looking at the documentation at
>>             http://data.bioontology.org/documentation#ProvisionalClass
>>
>>             There is a DELETE method available.  The URI takes the form:
>>
>>             {service_endpoint}/{resource_id}
>>
>>             where {resource_id} is a full URI; translating for this
>>             example we get:
>>
>>             service_endpoint =
>>             http://data.bioontology.org/provisional_classes/
>>             resource_id =
>>             http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073
>>             resource_id_encoded = http%3A%2F%2Fdata.bioontology.org
>>             <http://2Fdata.bioontology.org>%2Fprovisional_classes%2F4e3b6790-65eb-0131-7e69-005056010073
>>
>>             (Encoding the resource_id can be done with various tools;
>>             for this example, I've used
>>             http://meyerweb.com/eric/tools/dencoder/.)
>>
>>             So, the full URI for the DELETE looks like this:
>>
>>             http://data.bioontology.org/provisional_classes/http%3A%2F%2Fdata.bioontology.org%2Fprovisional_classes%2F4e3b6790-65eb-0131-7e69-005056010073
>>
>>             Hope that helps,
>>
>>             Darren
>>
>>
>>
>>             On 1/23/14, 8:49 AM, Thomas Rodenhausen wrote:
>>>             Hi,
>>>
>>>             see below I can't make this work, although a GET on the
>>>             same URI does. Can you tell me what I am doing wrong?
>>>
>>>             Also tried
>>>             - paths including the colon
>>>             - the full blown id string e.g.
>>>             http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073
>>>             - apikey as query string instead of authorization header
>>>
>>>             Thank you
>>>
>>>
>>>             1 > GET
>>>             http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073
>>>             1 > Accept: application/json
>>>             1 > Authorization: apikey token=...
>>>
>>>             2 < 200
>>>             2 < Age: 60
>>>             2 < Cache-Control: public, max-age=60
>>>             2 < Connection: close
>>>             2 < Content-Length: 589
>>>             2 < Content-Type: application/json;charset=utf-8
>>>             2 < Date: Thu, 23 Jan 2014 16:18:58 GMT
>>>             2 < Last-Modified: Wed, 22 Jan 2014 23:38:27 GMT
>>>             2 < Status: 200 OK
>>>             2 < Vary: User-Agent, Accept, Accept-Language,
>>>             Accept-Encoding, Authorization, NCBO-Slice
>>>             2 < X-Content-Digest:
>>>             07c5d1cec4fc52329ff7371eebe8e07cfa25931b
>>>             2 < X-Content-Type-Options: nosniff
>>>             2 < X-Rack-Cache: stale, valid, store
>>>             {"label":"test","synonym":[],"definition":[],"subclassOf":null,"creator":"http://data.bioontology.org/users/thomas.rodenhausen","created":"2014-01-22T15:31:56-08:00","permanentId":null,"noteId":null,"ontology":[],"@id":"http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073","@type":"http://data.bioontology.org/metadata/ProvisionalClass","@context":{"@vocab":"http://data.bioontology.org/metadata/","creator":{"@id":"http://data.bioontology.org/metadata/User","@type":"@id"},"ontology":{"@id":"http://data.bioontology.org/metadata/Ontology","@type":"@id"}}}
>>>
>>>             3 > DELETE
>>>             http://data.bioontology.org/provisional_classes/4e3b6790-65eb-0131-7e69-005056010073
>>>             3 > Accept: application/json
>>>             3 > Authorization: apikey token=...
>>>
>>>             4 < 500
>>>             4 < Connection: close
>>>             4 < Content-Length: 30
>>>             4 < Content-Type: text/html;charset=utf-8
>>>             4 < Date: Thu, 23 Jan 2014 16:20:35 GMT
>>>             4 < Status: 500 Internal Server Error
>>>             4 < X-Content-Type-Options: nosniff
>>>             4 < X-Frame-Options: SAMEORIGIN
>>>             4 < X-Rack-Cache: invalidate, pass
>>>             4 < X-XSS-Protection: 1; mode=block
>>>             <h1>Internal Server Error</h1>
>>>
>>>
>>>             _______________________________________________
>>>             bioontology-support mailing list
>>>             bioontology-support at lists.stanford.edu  <mailto:bioontology-support at lists.stanford.edu>
>>>             https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>>
>
>
>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20140226/6fba9297/attachment-0001.html>


More information about the bioontology-support mailing list