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[bioontology-support] VA ontology delete error

Vitaly Zimukha unknownnpc at gmail.com
Mon Jul 7 05:21:56 PDT 2014


Dear support team,

I can't delete ontology via using a console after server crash (problems
with electricity). I want to note that other ontologies work fine except
'broken' one. 

What I trying to do in the ncbo cron console:
pry(main)> ontology = LinkedData::Models::Ontology.find("MEDDRA").first
=> #<LinkedData::Models::Ontology:0x007fd984a19298
 @aggregates=nil,

@id=#<RDF::URI:0x3fecc250d5e0(http://data.bioontology.org/ontologies/MEDDRA)>,
 @loaded_attributes=#<Set: {}>,
 @modified_attributes=#<Set: {}>,
 @persistent=true,
 @previous_values=nil,
 @unmapped=nil>
pry(main)> ontology.delete
*Goo::Base::AttributeNotLoaded: Persistent object with `submissions` not
loaded
from
/usr/local/rbenv/versions/2.0.0-p247/lib/ruby/gems/2.0.0/bundler/gems/goo-9e387b5224d7/lib/goo/base/settings/settings.rb:238:in
`block in shape_attribute'*

In addition I can't see MEDDRA ontology on the web ui ontologies list
(http://my.va/ontologies). Manual parse works fine.

Could you please help me to delete 'broken' ontology or free up the 'MEDDRA'
acronym name. 

Best Regards,
Vitaly 




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