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[bioontology-support] BioPortal mappings

Paul R Alexander palexander at
Mon Jul 7 11:00:37 PDT 2014

There is an API available:
Documentation is located here:

There is no way as of now to download all ontology data in a single step, though we are working on a CSV downloadable version of our ontologies for a future release.

Mapping data is available from the API.


On Jul 7, 2014, at 12:26 AM, Rob Davidson <rob at> wrote:

> Dear support,
> I am interested in the BioPortal ontology data, especially how the definitions are linked. The wiki mentions an API but the associated page has apparently been removed as of Feb 2014. 
> Can you tell me if it is possible a) to download all the ontology data in one step b) to access the mapping results either from the downloaded data or via some API?
> Many thanks for your time,
> Rob Davidson
> -- 
> Robert L Davidson PhD
> GigaScience
> t: +852 60151009
> e: rob at
> a: GigaScience, BGI, 16 Dai Fu Street, Tai Po Industrial Estate, Tai Po, New Territories, Hong Kong
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at

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