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[bioontology-support] 2 small bugs with the umls2rdf tool

Clement Jonquet jonquet at
Tue Jul 8 02:40:23 PDT 2014

Hi all, 


Using the umls2rdf tool ( recently I
noticed 2 small bugs:


1.       In the .ttl file exported, when a string (eg., skos:definition)
contains the characters \" then BioPortal cannot parse the generated files.

2.       skos:prefLabel, skos:altLabel and skos:definition (maybe others)
are generated with @en by default. Which is not the case if the umls2rdf
tool is used to export from UMLS an ontology in another language such as
MSHFRE or MDRFRE which are French. Ideally the script should check the LAT
property of the UMLS source in the MRSAB table


Hope it helps ;)



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