Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Tools and scripts to generate mappings in a VA

Clement Jonquet jonquet at
Fri Jul 11 09:47:53 PDT 2014

Hi all, 


I am wondering where are the scripts/tools you guys used to generate
mappings btw ontologies.

Are they somewhere on GitHub or in the VA ?


For instances:

- I am hosting several OBO ontologies in my local appliance and they
contains "xref:" properties that represent mappings to other ontologies.

- I am hosting several UMLS ontologies that offer cui property that that
represent mappings to other ontologies.


Are those scripts available ?

Can some of them be automated when an ontology is parsed to be included in
BioPortal ?


Thank you





Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor

PI of the  <> SIFR project: Semantic Indexing of
French Biomedical Data Resources (ANR, UM2, CNRS, IBC)

Organizer of  <> Web Science
Montpellier Meetup


 <mailto:jonquet at> jonquet at



                University of Montpellier                          Tel:
+33/4 67 14 97 43

Fax:                     +33/4 67  41 85 00           

                161 rue Ada
Skype:                 clementpro
                34095 Montpellier Cdx 5                            Twitter:
<> @jonquet_lirmm

Google:                <mailto:jonquet.lirmm at>
jonquet.lirmm at






-------------- next part --------------
An HTML attachment was scrubbed...
URL: <>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.png
Type: image/png
Size: 204 bytes
Desc: not available
URL: <>

More information about the bioontology-support mailing list