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[bioontology-support] Bioportal Image at USC, Columbia - how to delete ontologies

Paul R Alexander palexander at stanford.edu
Fri Jul 11 14:59:41 PDT 2014


Yes, they can be deleted manually. We don’t have a cleanup process.

Paul


On Jul 10, 2014, at 2:02 AM, Clement Jonquet <jonquet at lirmm.fr> wrote:

> Hi,
>  
> By firing the 2 http calls (here under), the submissions and ontology are removed from BioPortal UI and from REST services responses, but the files are still there in :
> \srv\ncbo\repository\ACRO
>  
> Is-it safe to delete them manually ?
> Should that be done automatically when calling the REST services ?
>  
> Bye
> Clement
>  
> De : Clement Jonquet [mailto:jonquet at lirmm.fr] 
> Envoyé : lundi 12 mai 2014 17:45
> À : 'Nikhil Kapoor'
> Cc : 'HUHNS, MICHAEL'; 'Pat O'Keefe'; 'support at bioontology.org'; 'Paul R Alexander'
> Objet : RE: [bioontology-support] Bioportal Image at USC, Columbia - how to delete ontologies
>  
> Dear all,
>  
> An alternative way of doing it (thru the REST API) is:
>  
> 1. Delete submission(s) with:
>  
> HTTP DELETE
> http://appliancename.domain.edu:8082/ontologies/ACRO/submissions/1?apikey=youradminAPIkey
>  
> In which you replace 1 by your submission number and repeat for each submissions
>  
> 2. Delete ontology with:
>  
> HTTP DELETE
> http://appliancename.domain.edu:8082/ontologies/ACRO?apikey=youradminAPIkey&acronym=ACRO
>  
> Should be working ;)
> Clement
>  
>  
> ---------------------------------------------------------------------------------------------------------------------------
> Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor
> PI of the SIFR project: Semantic Indexing of French Biomedical Data Resources (ANR, UM2, CNRS, IBC)
> Organizer of Web Science Montpellier Meetup
>  
> jonquet at lirmm.fr
> http://www.lirmm.fr/~jonquet
>  
>                 University of Montpellier                          Tel:                      +33/4 67 14 97 43
>                 LIRMM                                                            Fax:                     +33/4 67  41 85 00          
>                 161 rue Ada                                                   Skype:                 clementpro
>                 34095 Montpellier Cdx 5                            Twitter:               @jonquet_lirmm
>                 France                                                            Google:               jonquet.lirmm at gmail.com
> ----------------------------------------------------------------------------------------------------------------------
> <image002.png>
>  
>  
>  
>  
>  
> 
> De : bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] De la part de Paul R Alexander
> Envoyé : samedi 10 mai 2014 02:05
> À : Nikhil Kapoor
> Cc : HUHNS, MICHAEL; Pat O'Keefe; support at bioontology.org
> Objet : Re: [bioontology-support] Bioportal Image at USC, Columbia - how to delete ontologies
>  
> Nikhil,
>  
> Please follow the instructions here for deleting an ontology:
> http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#How_do_I_delete_an_ontology.3F
>  
> Let me know if you have any questions or problems.
>  
> Paul
>  
>  
> On May 5, 2014, at 2:34 PM, Nikhil Kapoor <nikhilkapoor01 at gmail.com> wrote:
>  
> 
> Hi,
> 
> I am Nikhil and is part of a team working on a virtual image (using the one provided by bioportal) at the Computer Science Department at USC, Columbia SC. This project is being administered under the guidance of the Dept Chair Dr. Micheal N Huhns and Dr. Pat O'keefe.
> 
> We have been successful in setting up the image and it pretty much is running smoothly. However, we cannot figure out how to delete an ontology. I have used the bioportal before and recall contacting the support team to get an ontology deleted. So, I understand there is something that we need to do as an admin.
> 
> Please through some light on this. Thanks!  
>  
> 
> -------------------
> Nikhil Kapoor
> Computer Science and Engineering
> University of South Carolina
> Columbia, SC, USA
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> bioontology-support at lists.stanford.edu
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