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[bioontology-support] BioPortal Image at USC Columbia - Error Page

Paul R Alexander palexander at stanford.edu
Tue Jul 15 10:05:45 PDT 2014


By default we use the IP address of the machine, it shouldn’t affect the software, though.

Paul


On Jul 15, 2014, at 8:28 AM, okeefe <okeefe at cse.sc.edu> wrote:

> After running `bprestart`  I get the following warning messages: 
> 
> Starting memcached: WARNING: Setting item max size above 1MB is not 
> recommended!  Raising this limit increases th eminimum memory requirements 
> and will decrease your memory efficiency. 
> 
> Starting httpd:  httpd:  Could not reliably determine th eservers's fully 
> qualified domain name, using localhost.localdomain for ServerName 
> 
> Starting ncbo_cron: (LD) >> Using rdf store localhost:8081 
> (LD) >> Using search server at http://localhost:8080/solr/
> (LD) >> Using HTTP Redis instance at localhost:6380 
> (LD) >> Using Goo Redis instance at localhost:6382 
> (AN) >> using ANN Redis instance at localhost:6381 
> Daemon has started successfully. 
> 
> I wonder if the domainname is set properly? 
> 
> 
> > 
> > On Mon, 14 Jul 2014, baileelucas [via NCBO Support] wrote: 
> > 
> >> Hi, 
> >> 
> >> My name is Bailee Lucas and I am working on a virtual image of bioportal at 
> >> the Computer Science Department at USC, 
> >> Columbia, SC. This project is being administered under the guidance of the 
> >> Department Chair, Dr.Michael Huhns and 
> >> Dr.Pat O'Keefe. 
> >> 
> >> Our portal had been running smoothly, however, after a power outage, our 
> >> site only comes up with an error page saying, 
> >> "We're sorry but something has gone wrong. We have been notified of this 
> >> error." We have checked the server side of 
> >> things on our end and everything seems to be working there. We're thinking 
> >> that it has something to do with the actual 
> >> portal files. 
> >> 
> >> Here is a look at the errorLog: 
> >> [ 2014-07-14 03:32:41.0798 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout]  @data= 
> >> [ 2014-07-14 03:32:41.0801 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] <MemCache: 1 servers, 
> >> ns: "BioPortal", ro: false>, 
> >> [ 2014-07-14 03:32:41.0802 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout]  @middleware= 
> >> [ 2014-07-14 03:32:41.0812 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] 
> >> #<Class:0x007f790302cac8>, 
> >> [ 2014-07-14 03:32:41.0812 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout]  @thread_local_key= 
> >> [ 2014-07-14 03:32:41.0814 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] 
> >> :active_support_cache_mem_cache_store_local_cache> 
> >> [ 2014-07-14 03:32:41.4863 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] REDOING REQUEST NO 
> >> CACHE ENTRY http://10.0.2.15:8082/ontologies?include=all&include_views=true
> >> [ 2014-07-14 03:32:41.7582 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] REDOING REQUEST NO 
> >> CACHE ENTRY http://10.0.2.15:8082/ontologies?include=all&include_views=true
> >> [ 2014-07-14 03:39:51.4886 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] REDOING REQUEST NO 
> >> CACHE ENTRY http://10.0.2.15:8082/ontologies?include=all
> >> [ 2014-07-14 03:45:27.6418 1499/7f8db94df700 Pool2/Implementation.cpp:1291 
> >> ]: [App 1938 stdout] REDOING REQUEST NO 
> >> CACHE ENTRY http://10.0.2.15:8082/ontologies?include=all
> >> 
> >> Any help would be greatly appreciated! 
> >> 
> >> Bailee Lucas 
> >> 
> >> _______________________________________________________________________________________________________________________ 
> >> If you reply to this email, your message will be added to the discussion 
> >> below: 
> >> http://ncbo-support.2288202.n4.nabble.com/BioPortal-Image-at-USC-Columbia-Error-Page-tp4653174.html
> >> This email was sent by baileelucas (via Nabble) 
> >> To receive all replies by email, subscribe to this discussion 
> >> 
> >> 
> > 
> >
> -- 
> --- 
> Pat 
> --- 
> 
> Pat O'Keefe        ★  Systems Manager 
> [hidden email]  ★  Dept. of Computer Science & Engineering - Swearingen 1D28 
> +1 803 777-4611    ★  Univ. of South Carolina, Columbia, SC 29208 
> View this message in context: Re: BioPortal Image at USC Columbia - Error Page
> Sent from the NCBO Support mailing list archive at Nabble.com.
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