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[bioontology-support] uploading ontology

Paul R Alexander palexander at stanford.edu
Tue Jul 29 18:20:05 PDT 2014


Can you please give me the account name that you are using to log in? The ontology is marked as private, so it will only be visible to users who have access to the ontology.

Paul


On Jul 29, 2014, at 5:37 PM, Alexander Garcia Castro <alexgarciac at gmail.com> wrote:

> Paul, still issues with http://bioportal.bioontology.org/ontologies/APAONTO
> 
> this give me back "The page you are looking for wasn't found. Please try again." it does not matter if I am logged in. same result. also, when I log in, click on browse, and type apa over filter by text I dont see my ontology listed. 
> 
> 
> On Tue, Jul 29, 2014 at 5:28 PM, Paul R Alexander <palexander at stanford.edu> wrote:
> Alexander,
> 
> After getting your email off-list, I downloaded the ontology file and was able to upload it without a problem. I’m not sure why you had issues, though perhaps you hit a timeout. One thing you can do in the future is zip your file to reduce the file size, which will decrease the likelihood of a timeout occurring.
> 
> An even better fix is to publish your ontology file to a URL. You can submit the URL to BIoPortal and we will watch the URL for changes. Any time the file is changed, we will download the new version and create a new submission for the ontology.
> 
> For now, your new submission is available as version 4 and it will be processed by the system shortly.
> 
> Best,
> Paul
> 
> 
> On Jul 29, 2014, at 2:27 PM, Alexander Garcia Castro <alexgarciac at gmail.com> wrote:
> 
>> I have uploaded a new version of my ontology and now I have just lost all I had. in bioportal, the url is http://bioportal.bioontology.org/ontologies/APAONTO
>> if I click on the bioportal purl I get nothing (The page you are looking for wasn't found. Please try again".  BTW I am getting the same error msg even when I am logged. Where is now my ontology? has my previous submission been deleted?  
>> 
>> Can someone please let me know if the new version of the ontology was uploaded? when will I be able to see the new version?
>> 
>> Please let me know what am I doing wrong that every time I try to use bioportal for uploading a new ontology it is a nightmare. 
>> 
>> -- 
>> Alexander Garcia
>> http://www.alexandergarcia.name/
>> http://www.usefilm.com/photographer/75943.html
>> http://www.linkedin.com/in/alexgarciac
>> 
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 
> 
> 
> 
> -- 
> Alexander Garcia
> http://www.alexandergarcia.name/
> http://www.usefilm.com/photographer/75943.html
> http://www.linkedin.com/in/alexgarciac
> 

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