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[bioontology-support] bioportal API timeout

Ray Fergerson ray.fergerson at stanford.edu
Mon Jun 2 18:32:57 PDT 2014


Lori,

 

We believe that this problem is fixed now. Please try it again.

 

Ray

 

From: bioontology-support
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
Phillips, Lori C.
Sent: Monday, May 12, 2014 9:58 AM
To: support at bioontology.org
Subject: [bioontology-support] bioportal API timeout

 

Trying to extract LOINC using my i2b2 bioportal tools with new API

Was able to extract 444 of 3175 pages then:

HTTP timeout error:

 

ERROR [main] (?:?) - Method failed: HTTP/1.1 502 Bad Gateway

ERROR [main] (?:?) - <html>

<head><title>502 Bad Gateway</title></head>

<body bgcolor="white">

<center><h1>502 Bad Gateway</h1></center>

<hr><center>nginx/1.4.7</center>

</body>

</html>

 

ERROR [main] (?:?) - URL =
http://data.bioontology.org/ontologies/LOINC/classes?include=properties,sy
nonym,children
<http://data.bioontology.org/ontologies/LOINC/classes?include=properties,s
ynonym,children&format=xml&apikey=2c51bd1a-75fe-4f33-9ad8-7a5beb49f5f4&pag
e=445> &format=xml&apikey=2c51bd1a-75fe-4f33-9ad8-7a5beb49f5f4&page=445

INFO [main] (?:?) - Page 445 timed out; retrying

ERROR [main] (?:?) - Method failed: HTTP/1.1 502 Bad Gateway

ERROR [main] (?:?) - <html>

<head><title>502 Bad Gateway</title></head>

<body bgcolor="white">

<center><h1>502 Bad Gateway</h1></center>

<hr><center>nginx/1.4.7</center>

</body>

</html>

 

ERROR [main] (?:?) - URL =
http://data.bioontology.org/ontologies/LOINC/classes?include=properties,sy
nonym,children
<http://data.bioontology.org/ontologies/LOINC/classes?include=properties,s
ynonym,children&format=xml&apikey=2c51bd1a-75fe-4f33-9ad8-7a5beb49f5f4&pag
e=445> &format=xml&apikey=2c51bd1a-75fe-4f33-9ad8-7a5beb49f5f4&page=445

INFO [main] (?:?) - Page 445 timed out twice; ending extraction

Page 445 timed out twice; ending extraction

 

Lori Phillips

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