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[bioontology-support] [ORDO] bioportal issue

drashtti vasant vasant at ebi.ac.uk
Wed Jun 4 02:28:48 PDT 2014


Hi Ray, 
As Marc has pointed out, there are currently two 1.2 versions being displayed on the Bioportal website, the latest one is 1.3. This needs to be fixed before ambiguity sets in. 

Thanks, 
Drashtti 
Drashtti vasant
Samples Phenotypes and Ontologies Team
———————————————
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0) 1223492578
Skype: drash.vasant




On 4 Jun 2014, at 09:18, Marc Hanauer <marc.hanauer at inserm.fr> wrote:

> Dear Ray,
> Few days ago the 1.2 version was in "parse error" mood. I've made an update yesterday on our own server. The link in bioportal refers to this file on our server so that's why there is a "loaded" version I guess. I did'nt uploaded it directly in bioportal. (by the way the version seems to be 1.2 again but the owl file indicate: <owl:versionInfo>1.3</owl:versionInfo> )
> 
> And when I try to be connected (account name :ORDO_Orphanet) and access the page http://bioportal.bioontology.org/ontologies/ORDO I get this message :
> "We're sorry but something has gone wrong. We have been notified of this error." Always.
> 
> Any idea ?
> 
> Best regards,
> 
> 
> Marc HANAUER
> Directeur technique / Chief technology officer
> 
> marc.hanauer at inserm.fr
> 
> ORPHANET - INSERM US14
> Plateforme Maladies Rares / Rare Disease Platform
> 96 rue Didot
> 75014 PARIS
> FRANCE
> 
> Tel: +33 1 56 53 81 37
> Cell:+33 6 23 29 63 59
> <image-50ans-inserm.png>
> Le 03/06/2014 20:00, Ray Fergerson a écrit :
>> This page doesn’t show any problems now that I can see. There is a successfully loaded version and a new one appears to have been submitted today.
>> 
>>  
>> Are you still having problems?
>> 
>>  
>> Ray
>> 
>>  
>> 
>> From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of drashtti vasant
>> Sent: Tuesday, May 27, 2014 2:59 AM
>> To: support at bioontology.org
>> Cc: Marc Hanauer
>> Subject: [bioontology-support] Fwd: [ORDO] bioportal issue
>> 
>>  
>> Hi Ray, 
>> 
>> Marc (cc’d) from the Orphanet team had trouble updating the ORDO ontology information as well as parsing the new ontology. 
>> 
>> He has not heard anything back from BioPortal ( read mail below - detailing the issues). 
>> 
>>  
>> The webpage still shows that there has been an error in indexing the ontology. 
>> 
>>  
>> Would appreciate your help regarding this. 
>> 
>>  
>> Regards,
>> 
>> Drashtti.
>> 
>>  
>>  
>> Drashtti vasant
>> 
>> Samples Phenotypes and Ontologies Team
>> 
>> ———————————————
>> 
>> European Bioinformatics Institute (EMBL-EBI)
>> 
>> European Molecular Biology Laboratory
>> 
>> Wellcome Trust Genome Campus
>> 
>> Hinxton
>> 
>> Cambridge CB10 1SD
>> 
>> United Kingdom
>> 
>> Tel: +44 (0) 1223492578
>> 
>> Skype: drash.vasant
>> 
>>  
>>  
>>  
>>  
>> Begin forwarded message:
>> 
>> 
>> 
>> From: Marc Hanauer <marc.hanauer at inserm.fr>
>> 
>> Subject: [ORDO] bioportal issue
>> 
>> Date: 13 May 2014 14:23:56 BST
>> 
>> To: ray.fergerson at stanford.edu, admin at bioontology.org
>> 
>> Cc: Annie <annie.olry at inserm.fr>, Ana Rath <ana.rath at inserm.fr>, Drashtti Vasant <vasant at ebi.ac.uk>
>> 
>>  
>> Dear All,
>> I would like to update our ORDO ontology (and add few words in the description). But when I try to be connected (account name :ORDO_Orphanet) and access the page http://bioportal.bioontology.org/ontologies/ORDO I get this message :
>> "We're sorry but something has gone wrong. We have been notified of this error."
>> 
>> I've try with several browsers (firefox, chrome and also IE)
>> 
>> Do you have any idea or could you help us with this issue please ? (Maybe I've done something in the wrong way ?)
>> 
>> Best regards,
>> 
>> --
>> 
>> 
>> Marc HANAUER
>> Directeur technique / Chief technology officer
>> 
>> marc.hanauer at inserm.fr
>> 
>> ORPHANET - INSERM US14
>> Plateforme Maladies Rares / Rare Disease Platform
>> 96 rue Didot
>> 75014 PARIS
>> FRANCE
>> 
>> Tel: +33 1 56 53 81 37
>> Cell:+33 6 23 29 63 59
>> 
>> 
>>  
> 

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