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[bioontology-support] Old flash based Tree widget

Paul R Alexander palexander at stanford.edu
Thu Jun 5 16:20:58 PDT 2014


We are looking into this, it appears to be an error on our end.

Paul


On May 21, 2014, at 11:57 AM, sajinb <sajin.balakrishnan at gmail.com> wrote:

> Hi Paul,
>  
> I am still getting this error but it only comes when I specify startingRoot and search on text field.
> No errors came when I do not specify startingRoot.Attached is the error and code.
>  
> Thanks
> Sajin
> 
> 
> On Sat, Mar 29, 2014 at 5:53 AM, Paul R Alexander [via NCBO Support] <[hidden email]> wrote:
> Ok, I was finally able to reproduce this, thank you for the last screen shot. It should be fixed now.
> 
> Paul
> 
> 
> On Mar 25, 2014, at 12:48 PM, Sajin Balakrishnan <[hidden email]> wrote:
> 
>> Yes I still see the error  if  I search with in
>>   ontology: "NCIT",
>>       startingRoot:"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12219",
>> See the attahed screen shot.
>> There is no error if I search in the whole ontology(by removing startingRoot option)
>>  
>> 
>> 
>> On Tue, Mar 25, 2014 at 3:21 PM, Paul R Alexander <[hidden email]> wrote:
>> That works fine for me as well, no errors encountered. Are you still seeing the error about the Access-Control-Allow-Origin header?
>> 
>> Paul
>> 
>> 
>> On Mar 25, 2014, at 8:54 AM, sajinb <[hidden email]> wrote:
>> 
>>> Its still happening,the same code works if i give these values
>>>  
>>>  ontology: "AERO",
>>>       startingRoot:"http://purl.obolibrary.org/obo/AERO_0000004",
>>> but it does not work if I search with in this root
>>>  ontology: "NCIT",
>>>       startingRoot:"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12219"
>>>  
>>> Is it because there is character '#' in the startingRoot URL in the 2nd case 
>>> 
>>> 
>>> On Thu, Mar 20, 2014 at 8:37 PM, Paul R Alexander [via NCBO Support] <[hidden email]> wrote:
>>> I cannot reproduce this problem. Can you confirm that it is still happening? 
>>> 
>>> Paul 
>>> 
>>> 
>>> ----- Original Message ----- 
>>> From: "sajinb" <[hidden email]> 
>>> To: [hidden email] 
>>> Sent: Saturday, March 15, 2014 9:13:16 AM 
>>> Subject: Re: [bioontology-support] Old flash based Tree widget 
>>> 
>>> Thanks. 
>>> It works but for this code it does not.Attached is the code and error page. 
>>> 
>>> 
>>> On Tue, Mar 11, 2014 at 7:38 PM, Paul R Alexander [via NCBO Support] < [hidden email] > wrote: 
>>> 
>>> 
>>> 
>>> I believe this should be working now. There could be problems when a class is a subclass of two classes, but we don’t have a good way to fix this as of now. 
>>> 
>>> Paul 
>>> 
>>> 
>>> On Mar 6, 2014, at 8:42 PM, Sajin Balakrishnan < [hidden email] > wrote: 
>>> 
>>> 
>>> 
>>> 
>>> Its working now but if i give a startingRoot and search a term in the autocomplete textbox and select a particular term,the other classes which are not part of the tree are also shown.Also (+) sign did change to (-) on expand. 
>>> Please see attached files. 
>>> 
>>> 
>>> On Thu, Mar 6, 2014 at 9:41 PM, Paul R Alexander < [hidden email] > wrote: 
>>> 
>>> 
>>> 
>>> I introduced a bug that was causing this, my apologies. Please update again (clearing browser cache as needed). 
>>> 
>>> ----- Original Message ----- 
>>> From: "Sajin Balakrishnan" < [hidden email] > 
>>> To: "Paul R Alexander" < [hidden email] > 
>>> Cc: "BioPortal User Support" < [hidden email] > 
>>> Sent: Thursday, March 6, 2014 6:21:09 PM 
>>> Subject: Re: [bioontology-support] Old flash based Tree widget 
>>> 
>>> Hi Paul, 
>>> 
>>> The auto-complete text field of the Tree widget under widget section is not 
>>> working.I tried http://bioportal.bioontology.org/ontologies/AERO/?p=widgets . 
>>> When i start typing in the console it gives below error.Could you please 
>>> look into this. 
>>> 
>>> 1. 
>>> http://data.bioontology.org/search?q=hypo*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
>>> (Bad Request) 
>>> all.js?1394046824:4< http://bioportal.bioontology.org/javascripts/cache/all.js?1394046824 > 
>>> 
>>> GET 
>>> http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
>>> (Bad Request) 
>>> data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO:1 < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
>>> < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
>>> 
>>> 
>>> On Tue, Mar 4, 2014 at 7:58 PM, Sajin Balakrishnan < 
>>> [hidden email] > wrote: 
>>> 
>>> > Thanks Paul and team for adding this functionality so quickly 
>>> > On Mar 4, 2014 7:54 PM, "Paul R Alexander" < [hidden email] > 
>>> > wrote: 
>>> > 
>>> >> You can now pass in the option `*startingRoot*` to enable this 
>>> >> functionality. Note that you may need to clear your browser cache to get 
>>> >> the updated Javascript. 
>>> >> 
>>> >> Paul 
>>> >> 
>>> >> 
>>> >> On Mar 1, 2014, at 10:01 PM, sajinb <[hidden email]< http://user/SendEmail.jtp?type=node&node=4652664&i=0 >> 
>>> >> wrote: 
>>> >> 
>>> >> The old flash widget had an option in which by giving a root concept id 
>>> >> ,the 
>>> >> tree would display starting from the given concept id as root and hide all 
>>> >> others.Is this still available in the new one. 
>>> >> I tried tree.changeOntology from 
>>> >> http://www.bioontology.org/wiki/index.php/NCBO_Widgets but its not 
>>> >> working 
>>> >> can you provide an example. 
>>> >> 
>>> >> 
>>> >> 
>>> >> -- 
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>>> <code-used.txt> <step1.jpg> <step2.jpg> <step3.jpg> <step4.jpg>
>>> 
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>>> code.txt (1K) Download Attachment 
>>> error.jpg (175K) Download Attachment 
>>> 
>>> 
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>> 
>> 
>> <screen shot.JPG>
> 
> 
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