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[bioontology-support] SNOMED Ontology
ROBERT FRANKLIN LARIO
Robert.Lario at utah.edu
Fri Jun 6 17:36:06 PDT 2014
I figured out active_ingredient. Still not sure how CUI is ties in.
On Jun 6, 2014, at 6:26 PM, "ROBERT FRANKLIN LARIO" <Robert.Lario at utah.edu<mailto:Robert.Lario at utah.edu>> wrote:
I have downloaded SNOMED CT and run the PERL scripted as you suggested. The resulting owl file does not appear to be as rich as what is available via http://bioportal.bioontology.org/ontologies/SNOMEDCT. For example, I can locate the concept active_ingredient_of or CUI.
Is there an addition set of transformations I need to run?
Thanks for your help.
On Jun 5, 2014, at 4:26 PM, "Robert Hausam" <rrhausam at gmail.com<mailto:rrhausam at gmail.com>> wrote:
There is a PERL script that is distributed with the SNOMED CT International and US (and likely other) editions which will transform the SNOMED CT Release Format 2 (RF2) distribution files into an OWL representation. The transform is included in the SNOMED CT distributions from the NLM for use in the US. I use it frequently, and I think it's likely the best way to get what you're looking for.
On Thu, Jun 5, 2014 at 2:59 PM, Ray Fergerson <ray.fergerson at stanford.edu<mailto:ray.fergerson at stanford.edu>> wrote:
SNOMED has a more restrictive license than most of the ontologies in BioPortal and we cannot make it available for download. We are only licensed to provide a browser. You should try the contact information on the BioPortal SNOMED summary page to get a copy. I know that some effort has gone into making SNOMED available in OWL but I am not sure if this is even publically available yet.
From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu<mailto:bioontology-support-bounces at lists.stanford.edu>] On Behalf Of ROBERT FRANKLIN LARIO
Sent: Thursday, June 5, 2014 12:43 PM
To: support at bioontology.org<mailto:support at bioontology.org>
Subject: [bioontology-support] SNOMED Ontology
Is it possible to download the Systematized Nomenclature of Medicine - Clinical Terms ontology found here : http://bioportal.bioontology.org/ontologies/SNOMEDCT?p=classes ? I would like to work with the ontology locally.
I would like to get the information in OWL format if possible.
Thanks for your help.
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