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[bioontology-support] autocomplete issue with UBERON

Paul R Alexander palexander at stanford.edu
Thu Jun 19 18:31:57 PDT 2014


Jim,

Thanks for pointing this out. We’re having some problems when we parse the ontology and some classes are just missing. We don’t know exactly why yet but we’re investigating.

Best,
Paul


On Jun 19, 2014, at 12:38 PM, Jim Balhoff <balhoff at nescent.org> wrote:

> Hi Ray,
> 
> I noticed that while we are getting autocomplete results for Uberon, we are not getting all terms. For example, try to search for the term "appendage". Many others are missed as well.
> 
> Thank you,
> Jim
> 
> 
> On Jun 4, 2014, at 9:07 PM, Ray Fergerson <ray.fergerson at stanford.edu> wrote:
> 
>> Fixed.
>> 
>> Ray
>> 
>> -----Original Message-----
>> From: Jim Balhoff [mailto:balhoff at gmail.com] On Behalf Of Jim Balhoff
>> Sent: Wednesday, June 4, 2014 11:46 AM
>> To: Ray Fergerson
>> Cc: support at bioontology.org
>> Subject: Re: [bioontology-support] autocomplete issue with UBERON
>> 
>> Uberon is now working for me, but I am seeing the same problem with PATO
>> now:
>> 
>> https://bioportal.bioontology.org/ontologies/PATO/?p=classes&conceptid=roo
>> t
>> 
>> Thank you,
>> Jim
>> 
>> On Jun 3, 2014, at 6:11 PM, Ray Fergerson <ray.fergerson at stanford.edu>
>> wrote:
>> 
>>> Confirmed that search is broken for Uberon. Have filed a bug.
>>> 
>>> Ray
>>> 
>>> -----Original Message-----
>>> From: bioontology-support
>>> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of 
>>> Jim Balhoff
>>> Sent: Tuesday, June 3, 2014 1:21 PM
>>> To: support at bioontology.org Support
>>> Subject: [bioontology-support] autocomplete issue with UBERON
>>> 
>>> Autocomplete seems to be broken for term search on this page:
>>> 
>>> https://bioportal.bioontology.org/ontologies/UBERON/?p=classes&concept
>>> id=r
>>> oot
>>> 
>>> I use the Bioportal term complete widget elsewhere and am not able to 
>>> find UBERON terms there.
>>> 
>>> Thank you,
>>> Jim
>>> 
>>> 
>>> 
>>> ____________________________________________
>>> James P. Balhoff, Ph.D.
>>> National Evolutionary Synthesis Center
>>> 2024 West Main St., Suite A200
>>> Durham, NC 27705
>>> USA
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>> 
> 
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