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[bioontology-support] Annotating large texts

Ray Fergerson ray.fergerson at stanford.edu
Mon Mar 3 14:44:37 PST 2014


Sorry but this documentation is old. I will take it down. You need to use
the annotation functions documented at:

 

http://data.bioontology.org/documentation#nav_annotator 

 

Ray

 

From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
Philippe Soares
Sent: Monday, March 3, 2014 2:10 PM
To: BioPortal User Support
Subject: [bioontology-support] Annotating large texts

 

Hi,

I tried to annotate a large text (around 65000 characters) using the
annotator and I get an error saying "Please use less than 500 words. If
you need to annotate larger pieces of text you can use the
<http://www.bioontology.org/wiki/index.php/Annotator_User_Guide> Annotator
Web Service".

 

I tried, but I have the same limitation with the API and couldn't get any
parameter to increase that limit in the docs.

 

Have I missed something or do we have to split large texts on the client
side and send the chunks for annotation 1 by 1 ?

 

Thanks in advance.

 

Best regards,

 

Philippe

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