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[bioontology-support] Annotating large texts

Ray Fergerson ray.fergerson at stanford.edu
Tue Mar 4 15:21:59 PST 2014


In principle it is unlimited. If people cause us problems though we may
install some limits.

 

Note that after 60 seconds your connection will time out though. This is a
practical limit.

 

Also note that you may have trouble doing a GET with a long text. You
would be better off using a POST.

 

Ray

 

From: Philippe Soares [mailto:soaresp2 at gmail.com] 
Sent: Tuesday, March 4, 2014 8:02 AM
To: Ray Fergerson
Cc: BioPortal User Support
Subject: Re: [bioontology-support] Annotating large texts

 

Thanks Ray,

I still don't see anything about the text size on the new documentation.
Does it mean it's unlimited ?

 

2014-03-03 17:44 GMT-05:00 Ray Fergerson <ray.fergerson at stanford.edu>:

Sorry but this documentation is old. I will take it down. You need to use
the annotation functions documented at:

 

http://data.bioontology.org/documentation#nav_annotator 

 

Ray

 

From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
Philippe Soares
Sent: Monday, March 3, 2014 2:10 PM
To: BioPortal User Support
Subject: [bioontology-support] Annotating large texts

 

Hi,

I tried to annotate a large text (around 65000 characters) using the
annotator and I get an error saying "Please use less than 500 words. If
you need to annotate larger pieces of text you can use the
<http://www.bioontology.org/wiki/index.php/Annotator_User_Guide> Annotator
Web Service".

 

I tried, but I have the same limitation with the API and couldn't get any
parameter to increase that limit in the docs.

 

Have I missed something or do we have to split large texts on the client
side and send the chunks for annotation 1 by 1 ?

 

Thanks in advance.

 

Best regards,

 

Philippe

 

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