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[bioontology-support] Old flash based Tree widget

Paul R Alexander palexander at stanford.edu
Tue Mar 11 17:36:29 PDT 2014


I believe this should be working now. There could be problems when a class is a subclass of two classes, but we don’t have a good way to fix this as of now.

Paul


On Mar 6, 2014, at 8:42 PM, Sajin Balakrishnan <sajin.balakrishnan at gmail.com> wrote:

> Its working now but if i give a startingRoot and search a term in the autocomplete textbox and select a particular term,the other classes which are not part of the tree are also shown.Also (+) sign did change to (-) on expand.
> Please see attached files.
> 
> 
> On Thu, Mar 6, 2014 at 9:41 PM, Paul R Alexander <palexander at stanford.edu> wrote:
> I introduced a bug that was causing this, my apologies. Please update again (clearing browser cache as needed).
> 
> ----- Original Message -----
> From: "Sajin Balakrishnan" <sajin.balakrishnan at gmail.com>
> To: "Paul R Alexander" <palexander at stanford.edu>
> Cc: "BioPortal User Support" <bioontology-support at lists.stanford.edu>
> Sent: Thursday, March 6, 2014 6:21:09 PM
> Subject: Re: [bioontology-support] Old flash based Tree widget
> 
> Hi Paul,
> 
> The auto-complete text field of the Tree widget under widget section is not
> working.I tried http://bioportal.bioontology.org/ontologies/AERO/?p=widgets.
> When i start typing in the console it gives below error.Could you please
> look into this.
> 
>    1.
>    http://data.bioontology.org/search?q=hypo*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400
> (Bad Request)
>    all.js?1394046824:4<http://bioportal.bioontology.org/javascripts/cache/all.js?1394046824>
> 
> GET
> http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400
> (Bad Request)
> data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO:1<http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO>
> <http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO>
> 
> 
> On Tue, Mar 4, 2014 at 7:58 PM, Sajin Balakrishnan <
> sajin.balakrishnan at gmail.com> wrote:
> 
> > Thanks Paul and team for adding this functionality so quickly
> > On Mar 4, 2014 7:54 PM, "Paul R Alexander" <palexander at stanford.edu>
> > wrote:
> >
> >> You can now pass in the option `*startingRoot*` to enable this
> >> functionality. Note that you may need to clear your browser cache to get
> >> the updated Javascript.
> >>
> >> Paul
> >>
> >>
> >> On Mar 1, 2014, at 10:01 PM, sajinb <[hidden email]<http://user/SendEmail.jtp?type=node&node=4652664&i=0>>
> >> wrote:
> >>
> >> The old flash widget had an option in which by giving a root concept id
> >> ,the
> >> tree would display starting from the given concept id as root and hide all
> >> others.Is this still available in the new one.
> >> I tried tree.changeOntology from
> >> http://www.bioontology.org/wiki/index.php/NCBO_Widgets but its not
> >> working
> >> can you provide an example.
> >>
> >>
> >>
> >> --
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> <code-used.txt><step1.jpg><step2.jpg><step3.jpg><step4.jpg>

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