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[bioontology-support] NCIT concepts missing cui and semantic type via REST API

Lee M Surprenant lmsurpre at us.ibm.com
Thu Mar 13 14:19:58 PDT 2014


How do I retrieve the UMLS_CUI and Semantic Type from an NCI Thesaurus
concept?
I thought that the following would work:
http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224?include=all

However, the result appears as follows:
  "prefLabel": "Melanoma",
  "obsolete": false,
  "children": [ … ],
  "parents": [ … ],
  "synonym": [ … ],
  "definition": [ … ],
  "label": [ … ],
  "prefixIRI": "C3224",
  "notation": null,
  "semanticType": [ ],
  "cui": null,
  "xref": null,

Note that this same information is being displayed on the Web UI, so its
gotta be getting it from somewhere…

Is it a known issue?

thanks,

Lee Surprenant
IBM Emerging Technologies | jStart Team
lmsurpre at us.ibm.com | (919) 543-8919
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