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[bioontology-support] [bioontology-curator] Bioportal login issues

sridevi polavaram spolavar at gmail.com
Sat Mar 15 08:52:09 PDT 2014


Hi Samson,
 I tried with acronym NMOSP_1_6, but no luck :(

Thanks
Sridevi
<bioontology-support at lists.stanford.edu>


On Sat, Mar 15, 2014 at 10:39 AM, Samson Tu <swt at stanford.edu> wrote:

> Hi,
>
> Try making the acronym all uppercase and resubmit.
>
> *With best regards,*
> *Samson*
> On Mar 15, 2014, at 3:11 AM, sridevi polavaram <spolavar at gmail.com> wrote:
>
> Hi Ray,
>  Thanks for the response. I have switched to IE. But, i still see some
> weird behavior for the requests i am making to the bioportal server.
>
> I have created a new account by name NeuroMorpho.Org, it gave me error
> message saying that Bioportal has been notified of it, but then, i did see
> in the dash board that my account has been logged in anyways! This is just
> FYI, but right now my account seem to be working fine. However, i cannot
> create a new project. I have tried to enter the following information four
> times and it failed all the time. I saw the same error message, but this
> time, it was true.
>
>
> Name: Neuronal Morphologies and Metadata Classification System
> Acronym: NMOSp
> Institution: George Mason University
> Contacts: spolavar at gmu.edu
> Homepage: NeuroMorpho.Org
> Description: This is species taxonomy for the data curated in
> NeuroMorpho.Org. The existing ontologies are re-used as needed as the new
> metadata information for species and strains is deposited in
> NeuroMorpho.Org database. This species hierarchy consists of 56% of NCBI
> taxonomy and 39% of Rat strain ontology. The remaining 5% mostly consists
> of new concepts and few others from NIFSTD and MESH.
> Ontologies used: NCBITAXON, RS, NIFSTD, MESH
>
> Can i please request you to upload this information and create a new
> project form me. After my project is created, i want to upload my obo
> ontology file (attached). Once you set this up, I would like to test the
> new widget system asap.
>
> FYI. I have many more ontologies that i want to upload subsequently, all
> of them are related to NeuroMorpho.Org. Hopefully, i should be able to
> manage uploading and editing them by myself.
>
> Thank you,
> Sridevi
>
>
>
>
>
> On Thu, Mar 13, 2014 at 6:00 PM, Ray Fergerson <ray.fergerson at stanford.edu
> > wrote:
>
>> I suggest clearing your cache and trying again. The registration page
>> should have an image of text for you to enter. I am also using Firefox and
>> it works for me. Perhaps this is removed because you are blocking images
>> (or ads?).
>>
>>
>>
>> It sounds like you are still using the old system, which is about to be
>> shutdown. If by ontology id you mean something like "1234" then this is the
>> old system. The ids for ontologies on the new system are acronyms. There
>> are new widgets which work with the next system.
>>
>>
>>
>> Ray
>>
>>
>>
>> *From:* bioontology-curator [mailto:
>> bioontology-curator-bounces at lists.stanford.edu] *On Behalf Of *sridevi
>> polavaram
>> *Sent:* Wednesday, March 12, 2014 12:42 PM
>> *To:* BioPortal Curators
>> *Subject:* [bioontology-curator] Bioportal login issues
>>
>>
>>
>> Dear Curator,
>>
>>  I had setup my account in Biportal and have been managing two resources
>> on it. Here are the acronyms that are listed in bioportal:
>>
>> (a) NCBI_NMOsp_1_2_2
>>
>> (b) H1_NMOABA_4_1
>>
>> These two are currently setup as view to NCBI taxonomy and ABA
>> ontologies.
>>
>> Mainly, I have been using the auto completion web service using the
>> ontology IDs. But now, i am having a couple of issues with the system.
>>
>> 1. first of all i am not able to login with my existing user account, so
>> i tried to create a new login for which i get an error! (see attachment)
>>
>> 2. I don't see ontology IDs for these resources. Can i still be able to
>> use the auto completion widget?
>>
>> Please let me know if you can resolve these issues as i am trying to
>> upload latest versions to the Bioportal.
>>
>> Thank you,
>>
>> Sridevi
>>
>> Lab IT Supervisor/Neuroscience PhD candidate
>> Computational Neuroanatomy Group
>> Krasnow Institute for Advanced Study
>> George Mason University
>> spolavar at gmu.edu
>> Phone: 703-993-4376 (O)
>>
>>
>>
>
> <NCBI_NMOsp_v1.6.obo>_______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
> --
> Samson Tu                                                     email:
> swt at stanford.edu
> Senior Research Scientist                               web:
> www.stanford.edu/~swt/
> Center for Biomedical Informatics Research  phone: 1-650-725-3391
> Stanford University                                          fax:
> 1-650-725-7944
>
>
>
>
>
>
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