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[bioontology-support] [bioontology-curator] Bioportal login issues

Ray Fergerson ray.fergerson at stanford.edu
Mon Mar 17 15:51:26 PDT 2014


Sridevi,

 

We will check into the project creation problem but this should not
prevent you from uploading your ontology. Creating an ontology has nothing
to do with creating a project. Just go to the Browse page and hit the big
"create an ontology" button.

 

Ray

 

From: sridevi polavaram [mailto:spolavar at gmail.com] 
Sent: Saturday, March 15, 2014 3:11 AM
To: Ray Fergerson; BioPortal Curators;
bioontology-support at lists.stanford.edu
Subject: Re: [bioontology-curator] Bioportal login issues

 

Hi Ray, 

 Thanks for the response. I have switched to IE. But, i still see some
weird behavior for the requests i am making to the bioportal server. 

I have created a new account by name NeuroMorpho.Org, it gave me error
message saying that Bioportal has been notified of it, but then, i did see
in the dash board that my account has been logged in anyways! This is just
FYI, but right now my account seem to be working fine. However, i cannot
create a new project. I have tried to enter the following information four
times and it failed all the time. I saw the same error message, but this
time, it was true.


Name: Neuronal Morphologies and Metadata Classification System

Acronym: NMOSp

Institution: George Mason University

Contacts: spolavar at gmu.edu

Homepage: NeuroMorpho.Org
Description: This is species taxonomy for the data curated in
NeuroMorpho.Org. The existing ontologies are re-used as needed as the new
metadata information for species and strains is deposited in
NeuroMorpho.Org database. This species hierarchy consists of 56% of NCBI
taxonomy and 39% of Rat strain ontology. The remaining 5% mostly consists
of new concepts and few others from NIFSTD and MESH.

Ontologies used: NCBITAXON, RS, NIFSTD, MESH 

Can i please request you to upload this information and create a new
project form me. After my project is created, i want to upload my obo
ontology file (attached). Once you set this up, I would like to test the
new widget system asap.

FYI. I have many more ontologies that i want to upload subsequently, all
of them are related to NeuroMorpho.Org. Hopefully, i should be able to
manage uploading and editing them by myself.

Thank you,
Sridevi 

 

 

 

 

On Thu, Mar 13, 2014 at 6:00 PM, Ray Fergerson
<ray.fergerson at stanford.edu> wrote:

I suggest clearing your cache and trying again. The registration page
should have an image of text for you to enter. I am also using Firefox and
it works for me. Perhaps this is removed because you are blocking images
(or ads?).

 

It sounds like you are still using the old system, which is about to be
shutdown. If by ontology id you mean something like "1234" then this is
the old system. The ids for ontologies on the new system are acronyms.
There are new widgets which work with the next system.

 

Ray

 

From: bioontology-curator
[mailto:bioontology-curator-bounces at lists.stanford.edu] On Behalf Of
sridevi polavaram
Sent: Wednesday, March 12, 2014 12:42 PM
To: BioPortal Curators
Subject: [bioontology-curator] Bioportal login issues

 

Dear Curator,

 I had setup my account in Biportal and have been managing two resources
on it. Here are the acronyms that are listed in bioportal:

(a) NCBI_NMOsp_1_2_2

(b) H1_NMOABA_4_1

These two are currently setup as view to NCBI taxonomy and ABA ontologies.


Mainly, I have been using the auto completion web service using the
ontology IDs. But now, i am having a couple of issues with the system. 

1. first of all i am not able to login with my existing user account, so i
tried to create a new login for which i get an error! (see attachment)

2. I don't see ontology IDs for these resources. Can i still be able to
use the auto completion widget? 

Please let me know if you can resolve these issues as i am trying to
upload latest versions to the Bioportal. 

Thank you,

Sridevi

Lab IT Supervisor/Neuroscience PhD candidate
Computational Neuroanatomy Group
Krasnow Institute for Advanced Study
George Mason University
spolavar at gmu.edu
Phone: 703-993-4376 (O)

 

 

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