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[bioontology-support] Old flash based Tree widget

Paul R Alexander palexander at stanford.edu
Thu Mar 20 17:36:44 PDT 2014


I cannot reproduce this problem. Can you confirm that it is still happening?

Paul


----- Original Message -----
From: "sajinb" <sajin.balakrishnan at gmail.com>
To: bioontology-support at lists.stanford.edu
Sent: Saturday, March 15, 2014 9:13:16 AM
Subject: Re: [bioontology-support] Old flash based Tree widget

Thanks. 
It works but for this code it does not.Attached is the code and error page. 


On Tue, Mar 11, 2014 at 7:38 PM, Paul R Alexander [via NCBO Support] < [hidden email] > wrote: 



I believe this should be working now. There could be problems when a class is a subclass of two classes, but we don’t have a good way to fix this as of now. 

Paul 


On Mar 6, 2014, at 8:42 PM, Sajin Balakrishnan < [hidden email] > wrote: 




Its working now but if i give a startingRoot and search a term in the autocomplete textbox and select a particular term,the other classes which are not part of the tree are also shown.Also (+) sign did change to (-) on expand. 
Please see attached files. 


On Thu, Mar 6, 2014 at 9:41 PM, Paul R Alexander < [hidden email] > wrote: 



I introduced a bug that was causing this, my apologies. Please update again (clearing browser cache as needed). 

----- Original Message ----- 
From: "Sajin Balakrishnan" < [hidden email] > 
To: "Paul R Alexander" < [hidden email] > 
Cc: "BioPortal User Support" < [hidden email] > 
Sent: Thursday, March 6, 2014 6:21:09 PM 
Subject: Re: [bioontology-support] Old flash based Tree widget 

Hi Paul, 

The auto-complete text field of the Tree widget under widget section is not 
working.I tried http://bioportal.bioontology.org/ontologies/AERO/?p=widgets . 
When i start typing in the console it gives below error.Could you please 
look into this. 

1. 
http://data.bioontology.org/search?q=hypo*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400 
(Bad Request) 
all.js?1394046824:4< http://bioportal.bioontology.org/javascripts/cache/all.js?1394046824 > 

GET 
http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400 
(Bad Request) 
data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO:1 < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
< http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 


On Tue, Mar 4, 2014 at 7:58 PM, Sajin Balakrishnan < 
[hidden email] > wrote: 

> Thanks Paul and team for adding this functionality so quickly 
> On Mar 4, 2014 7:54 PM, "Paul R Alexander" < [hidden email] > 
> wrote: 
> 
>> You can now pass in the option `*startingRoot*` to enable this 
>> functionality. Note that you may need to clear your browser cache to get 
>> the updated Javascript. 
>> 
>> Paul 
>> 
>> 
>> On Mar 1, 2014, at 10:01 PM, sajinb <[hidden email]< http://user/SendEmail.jtp?type=node&node=4652664&i=0 >> 
>> wrote: 
>> 
>> The old flash widget had an option in which by giving a root concept id 
>> ,the 
>> tree would display starting from the given concept id as root and hide all 
>> others.Is this still available in the new one. 
>> I tried tree.changeOntology from 
>> http://www.bioontology.org/wiki/index.php/NCBO_Widgets but its not 
>> working 
>> can you provide an example. 
>> 
>> 
>> 
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<code-used.txt> <step1.jpg> <step2.jpg> <step3.jpg> <step4.jpg> 


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