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[bioontology-support] Old flash based Tree widget

Paul R Alexander palexander at stanford.edu
Tue Mar 25 12:21:02 PDT 2014


That works fine for me as well, no errors encountered. Are you still seeing the error about the Access-Control-Allow-Origin header?

Paul


On Mar 25, 2014, at 8:54 AM, sajinb <sajin.balakrishnan at gmail.com> wrote:

> Its still happening,the same code works if i give these values
>  
>  ontology: "AERO",
>       startingRoot:"http://purl.obolibrary.org/obo/AERO_0000004",
> but it does not work if I search with in this root
>  ontology: "NCIT",
>       startingRoot:"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12219"
>  
> Is it because there is character '#' in the startingRoot URL in the 2nd case 
> 
> 
> On Thu, Mar 20, 2014 at 8:37 PM, Paul R Alexander [via NCBO Support] <[hidden email]> wrote:
> I cannot reproduce this problem. Can you confirm that it is still happening? 
> 
> Paul 
> 
> 
> ----- Original Message ----- 
> From: "sajinb" <[hidden email]> 
> To: [hidden email] 
> Sent: Saturday, March 15, 2014 9:13:16 AM 
> Subject: Re: [bioontology-support] Old flash based Tree widget 
> 
> Thanks. 
> It works but for this code it does not.Attached is the code and error page. 
> 
> 
> On Tue, Mar 11, 2014 at 7:38 PM, Paul R Alexander [via NCBO Support] < [hidden email] > wrote: 
> 
> 
> 
> I believe this should be working now. There could be problems when a class is a subclass of two classes, but we don’t have a good way to fix this as of now. 
> 
> Paul 
> 
> 
> On Mar 6, 2014, at 8:42 PM, Sajin Balakrishnan < [hidden email] > wrote: 
> 
> 
> 
> 
> Its working now but if i give a startingRoot and search a term in the autocomplete textbox and select a particular term,the other classes which are not part of the tree are also shown.Also (+) sign did change to (-) on expand. 
> Please see attached files. 
> 
> 
> On Thu, Mar 6, 2014 at 9:41 PM, Paul R Alexander < [hidden email] > wrote: 
> 
> 
> 
> I introduced a bug that was causing this, my apologies. Please update again (clearing browser cache as needed). 
> 
> ----- Original Message ----- 
> From: "Sajin Balakrishnan" < [hidden email] > 
> To: "Paul R Alexander" < [hidden email] > 
> Cc: "BioPortal User Support" < [hidden email] > 
> Sent: Thursday, March 6, 2014 6:21:09 PM 
> Subject: Re: [bioontology-support] Old flash based Tree widget 
> 
> Hi Paul, 
> 
> The auto-complete text field of the Tree widget under widget section is not 
> working.I tried http://bioportal.bioontology.org/ontologies/AERO/?p=widgets . 
> When i start typing in the console it gives below error.Could you please 
> look into this. 
> 
> 1. 
> http://data.bioontology.org/search?q=hypo*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
> (Bad Request) 
> all.js?1394046824:4< http://bioportal.bioontology.org/javascripts/cache/all.js?1394046824 > 
> 
> GET 
> http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
> (Bad Request) 
> data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO:1 < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
> < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
> 
> 
> On Tue, Mar 4, 2014 at 7:58 PM, Sajin Balakrishnan < 
> [hidden email] > wrote: 
> 
> > Thanks Paul and team for adding this functionality so quickly 
> > On Mar 4, 2014 7:54 PM, "Paul R Alexander" < [hidden email] > 
> > wrote: 
> > 
> >> You can now pass in the option `*startingRoot*` to enable this 
> >> functionality. Note that you may need to clear your browser cache to get 
> >> the updated Javascript. 
> >> 
> >> Paul 
> >> 
> >> 
> >> On Mar 1, 2014, at 10:01 PM, sajinb <[hidden email]< http://user/SendEmail.jtp?type=node&node=4652664&i=0 >> 
> >> wrote: 
> >> 
> >> The old flash widget had an option in which by giving a root concept id 
> >> ,the 
> >> tree would display starting from the given concept id as root and hide all 
> >> others.Is this still available in the new one. 
> >> I tried tree.changeOntology from 
> >> http://www.bioontology.org/wiki/index.php/NCBO_Widgets but its not 
> >> working 
> >> can you provide an example. 
> >> 
> >> 
> >> 
> >> -- 
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> >> NAML< http://ncbo-support.2288202.n4.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml > 
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> >
> <code-used.txt> <step1.jpg> <step2.jpg> <step3.jpg> <step4.jpg> 
> 
> 
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> 
> code.txt (1K) Download Attachment 
> error.jpg (175K) Download Attachment 
> 
> 
> View this message in context: Re: [bioontology-support] Old flash based Tree widget 
> Sent from the NCBO Support mailing list archive at Nabble.com. 
> 
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