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[bioontology-support] Taxonomy not showing

Ray Fergerson ray.fergerson at stanford.edu
Tue Mar 25 14:01:21 PDT 2014


James,

 

This is a "design bug" that we should fix. The problem is that Eukaryota
has "too many" children so we only display  N (200?) subclasses for
performance reasons. Unfortunately there is no indication that this has
happened. 

 

We need a better scheme here - and probably a larger N.

 

Ray

 

From: bioontology-support
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of James
Malone
Sent: Tuesday, March 25, 2014 7:52 AM
To: support
Subject: [bioontology-support] Taxonomy not showing

 

Hi,

 

A good chunk of the taxa is missing under organism, for instance Mus which
is def in the ontology as subclass of
<http://bioportal.bioontology.org/ontologies/EFO?p=classes&conceptid=http%
3A%2F%2Fpurl.obolibrary.org%2Fobo%2FNCBITaxon_2759> Eukaryota

 

http://bioportal.bioontology.org/ontologies/EFO/?p=classes
<http://bioportal.bioontology.org/ontologies/EFO/?p=classes&conceptid=http
://purl.obolibrary.org/obo/NCBITaxon_10088&jump_to_nav=true>
&conceptid=http://purl.obolibrary.org/obo/NCBITaxon_10088&jump_to_nav=true

 

seems to be found but I can't visually see it under Eukaryota.

 

Thanks,

 

James

 

-

Blog: http://drjamesmalone.blogspot.co.uk/
Twitter: https://twitter.com/jamesmalone

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: + 44 (0) 1223 494 676

 

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