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[bioontology-support] Old flash based Tree widget

Paul R Alexander palexander at stanford.edu
Fri Mar 28 17:22:38 PDT 2014


Ok, I was finally able to reproduce this, thank you for the last screen shot. It should be fixed now.

Paul


On Mar 25, 2014, at 12:48 PM, Sajin Balakrishnan <sajin.balakrishnan at gmail.com> wrote:

> Yes I still see the error  if  I search with in
>   ontology: "NCIT",
>       startingRoot:"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12219",
> See the attahed screen shot.
> There is no error if I search in the whole ontology(by removing startingRoot option)
>  
> 
> 
> On Tue, Mar 25, 2014 at 3:21 PM, Paul R Alexander <palexander at stanford.edu> wrote:
> That works fine for me as well, no errors encountered. Are you still seeing the error about the Access-Control-Allow-Origin header?
> 
> Paul
> 
> 
> On Mar 25, 2014, at 8:54 AM, sajinb <sajin.balakrishnan at gmail.com> wrote:
> 
>> Its still happening,the same code works if i give these values
>>  
>>  ontology: "AERO",
>>       startingRoot:"http://purl.obolibrary.org/obo/AERO_0000004",
>> but it does not work if I search with in this root
>>  ontology: "NCIT",
>>       startingRoot:"http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12219"
>>  
>> Is it because there is character '#' in the startingRoot URL in the 2nd case 
>> 
>> 
>> On Thu, Mar 20, 2014 at 8:37 PM, Paul R Alexander [via NCBO Support] <[hidden email]> wrote:
>> I cannot reproduce this problem. Can you confirm that it is still happening? 
>> 
>> Paul 
>> 
>> 
>> ----- Original Message ----- 
>> From: "sajinb" <[hidden email]> 
>> To: [hidden email] 
>> Sent: Saturday, March 15, 2014 9:13:16 AM 
>> Subject: Re: [bioontology-support] Old flash based Tree widget 
>> 
>> Thanks. 
>> It works but for this code it does not.Attached is the code and error page. 
>> 
>> 
>> On Tue, Mar 11, 2014 at 7:38 PM, Paul R Alexander [via NCBO Support] < [hidden email] > wrote: 
>> 
>> 
>> 
>> I believe this should be working now. There could be problems when a class is a subclass of two classes, but we don’t have a good way to fix this as of now. 
>> 
>> Paul 
>> 
>> 
>> On Mar 6, 2014, at 8:42 PM, Sajin Balakrishnan < [hidden email] > wrote: 
>> 
>> 
>> 
>> 
>> Its working now but if i give a startingRoot and search a term in the autocomplete textbox and select a particular term,the other classes which are not part of the tree are also shown.Also (+) sign did change to (-) on expand. 
>> Please see attached files. 
>> 
>> 
>> On Thu, Mar 6, 2014 at 9:41 PM, Paul R Alexander < [hidden email] > wrote: 
>> 
>> 
>> 
>> I introduced a bug that was causing this, my apologies. Please update again (clearing browser cache as needed). 
>> 
>> ----- Original Message ----- 
>> From: "Sajin Balakrishnan" < [hidden email] > 
>> To: "Paul R Alexander" < [hidden email] > 
>> Cc: "BioPortal User Support" < [hidden email] > 
>> Sent: Thursday, March 6, 2014 6:21:09 PM 
>> Subject: Re: [bioontology-support] Old flash based Tree widget 
>> 
>> Hi Paul, 
>> 
>> The auto-complete text field of the Tree widget under widget section is not 
>> working.I tried http://bioportal.bioontology.org/ontologies/AERO/?p=widgets . 
>> When i start typing in the console it gives below error.Could you please 
>> look into this. 
>> 
>> 1. 
>> http://data.bioontology.org/search?q=hypo*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
>> (Bad Request) 
>> all.js?1394046824:4< http://bioportal.bioontology.org/javascripts/cache/all.js?1394046824 > 
>> 
>> GET 
>> http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO400  
>> (Bad Request) 
>> data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO:1 < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
>> < http://data.bioontology.org/search?q=adv*&apikey=4ea81d74-8960-4525-810b-fa1baab576ff&no_context=true&ontologies=AERO&subtree_id=roots&ontology=AERO > 
>> 
>> 
>> On Tue, Mar 4, 2014 at 7:58 PM, Sajin Balakrishnan < 
>> [hidden email] > wrote: 
>> 
>> > Thanks Paul and team for adding this functionality so quickly 
>> > On Mar 4, 2014 7:54 PM, "Paul R Alexander" < [hidden email] > 
>> > wrote: 
>> > 
>> >> You can now pass in the option `*startingRoot*` to enable this 
>> >> functionality. Note that you may need to clear your browser cache to get 
>> >> the updated Javascript. 
>> >> 
>> >> Paul 
>> >> 
>> >> 
>> >> On Mar 1, 2014, at 10:01 PM, sajinb <[hidden email]< http://user/SendEmail.jtp?type=node&node=4652664&i=0 >> 
>> >> wrote: 
>> >> 
>> >> The old flash widget had an option in which by giving a root concept id 
>> >> ,the 
>> >> tree would display starting from the given concept id as root and hide all 
>> >> others.Is this still available in the new one. 
>> >> I tried tree.changeOntology from 
>> >> http://www.bioontology.org/wiki/index.php/NCBO_Widgets but its not 
>> >> working 
>> >> can you provide an example. 
>> >> 
>> >> 
>> >> 
>> >> -- 
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>> <code-used.txt> <step1.jpg> <step2.jpg> <step3.jpg> <step4.jpg> 
>> 
>> 
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>> 
>> code.txt (1K) Download Attachment 
>> error.jpg (175K) Download Attachment 
>> 
>> 
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> 
> 
> <screen shot.JPG>

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