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[bioontology-support] OLD Rest API

Alejandro Barahona abarahona at infomed.dia.fi.upm.es
Thu Oct 2 00:06:52 PDT 2014


Hi paul

What i want to know is if exists any example of the xml result of making
that call (" http://rest.bioontology.org/bioportal/virtual/rootpath/{ontologyId}/{conceptId}[?apikey={YourAPIKey}&{optional
args}]"), i search for it at wiki but the example returns:

<errorStatus>
<accessedResource>/bioportal/virtual/rootpath/1032/C3224</accessedResource>
<accessDate>2014-10-02 00:05:39.735 PDT</accessDate>
<shortMessage>Internal Server Error</shortMessage>
<longMessage>
White spaces are required between publicId and systemId.
</longMessage>
<errorCode>500</errorCode>
</errorStatus>


Alejandro

2014-10-02 2:03 GMT+02:00 Paul R Alexander <palexander at stanford.edu>:

> Alejandro,
>
> There are two things that could be useful to replace that call. The first
> is getting ancestors for a given class:
>
> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/ancestors
> <http://data.bioontology.org/ontologies/NCIT/classes/http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3224/ancestors>
>
> The second would be the tree representation:
>
> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/tree
> <http://data.bioontology.org/ontologies/NCIT/classes/http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3224/tree>
>
> The second is really only useful for drawing a tree for a UI because if
> there are multiple paths between the given class and the root node then it
> just selects one. Ancestors should give you all the paths.
>
> Paul
>
>
> On Oct 1, 2014, at 12:29 AM, Alejandro Barahona <
> abarahona at infomed.dia.fi.upm.es> wrote:
>
> Hi
>
> Im a developer and i was fixing a tool with the new api, but it uses the
> old api and i have to return some thigs like it does, i have one question:
> Is there any example result of the query,
> http://rest.bioontology.org/bioportal/virtual/rootpath/1032/C3224?apikey=YourAPIK
> <http://rest.bioontology.org/bioportal/virtual/rootpath/1032/C3224?apikey=YourAPIKey>, maked
> with the old api???
>
> Regards,
> Alejandro.
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
>
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