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[bioontology-support] OLD Rest API

Paul R Alexander palexander at stanford.edu
Thu Oct 2 10:24:02 PDT 2014


Alejandro,

The REST API available at rest.bioontology.org is now deprecated. You will need to use the calls that I indicated that are available at data.bioontology.org. Documentation on using the new API is here: http://data.bioontology.org/documentation

Paul


On Oct 2, 2014, at 12:06 AM, Alejandro Barahona <abarahona at infomed.dia.fi.upm.es> wrote:

> Hi paul
> 
> What i want to know is if exists any example of the xml result of making that call (" http://rest.bioontology.org/bioportal/virtual/rootpath/{ontologyId}/{conceptId}[?apikey={YourAPIKey}&{optional args}]"), i search for it at wiki but the example returns: 
> 
> <errorStatus>
> <accessedResource>/bioportal/virtual/rootpath/1032/C3224</accessedResource>
> <accessDate>2014-10-02 00:05:39.735 PDT</accessDate>
> <shortMessage>Internal Server Error</shortMessage>
> <longMessage>
> White spaces are required between publicId and systemId.
> </longMessage>
> <errorCode>500</errorCode>
> </errorStatus>
> 
> 
> Alejandro
> 
> 2014-10-02 2:03 GMT+02:00 Paul R Alexander <palexander at stanford.edu>:
> Alejandro,
> 
> There are two things that could be useful to replace that call. The first is getting ancestors for a given class:
> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/ancestors
> 
> The second would be the tree representation:
> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/tree
> 
> The second is really only useful for drawing a tree for a UI because if there are multiple paths between the given class and the root node then it just selects one. Ancestors should give you all the paths.
> 
> Paul
> 
> 
> On Oct 1, 2014, at 12:29 AM, Alejandro Barahona <abarahona at infomed.dia.fi.upm.es> wrote:
> 
>> Hi
>> 
>> Im a developer and i was fixing a tool with the new api, but it uses the old api and i have to return some thigs like it does, i have one question: Is there any example result of the query,  http://rest.bioontology.org/bioportal/virtual/rootpath/1032/C3224?apikey=YourAPIK, maked with the old api???
>> 
>> Regards,
>> Alejandro.
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 
> 

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