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[bioontology-support] OLD Rest API

Alejandro Barahona abarahona at infomed.dia.fi.upm.es
Fri Oct 3 00:22:08 PDT 2014


Paul,

I know it is now deprecated but i need to know what it returns because i
need to make a similar document so our tool could read it as it does before
it was deprecated

2014-10-02 19:24 GMT+02:00 Paul R Alexander <palexander at stanford.edu>:

> Alejandro,
>
> The REST API available at rest.bioontology.org is now deprecated. You
> will need to use the calls that I indicated that are available at
> data.bioontology.org. Documentation on using the new API is here:
> http://data.bioontology.org/documentation
>
> Paul
>
>
> On Oct 2, 2014, at 12:06 AM, Alejandro Barahona <
> abarahona at infomed.dia.fi.upm.es> wrote:
>
> Hi paul
>
> What i want to know is if exists any example of the xml result of making
> that call (" http://rest.bioontology.org/bioportal/virtual/rootpath/{ontologyId}/{conceptId}[?apikey={YourAPIKey}&{optional
> args}]"), i search for it at wiki but the example returns:
>
> <errorStatus>
> <accessedResource>/bioportal/virtual/rootpath/1032/C3224
> </accessedResource>
> <accessDate>2014-10-02 00:05:39.735 PDT</accessDate>
> <shortMessage>Internal Server Error</shortMessage>
> <longMessage>
> White spaces are required between publicId and systemId.
> </longMessage>
> <errorCode>500</errorCode>
> </errorStatus>
>
>
> Alejandro
>
> 2014-10-02 2:03 GMT+02:00 Paul R Alexander <palexander at stanford.edu>:
>
>> Alejandro,
>>
>> There are two things that could be useful to replace that call. The first
>> is getting ancestors for a given class:
>>
>> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/ancestors
>> <http://data.bioontology.org/ontologies/NCIT/classes/http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3224/ancestors>
>>
>> The second would be the tree representation:
>>
>> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C3224/tree
>> <http://data.bioontology.org/ontologies/NCIT/classes/http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3224/tree>
>>
>> The second is really only useful for drawing a tree for a UI because if
>> there are multiple paths between the given class and the root node then it
>> just selects one. Ancestors should give you all the paths.
>>
>> Paul
>>
>>
>> On Oct 1, 2014, at 12:29 AM, Alejandro Barahona <
>> abarahona at infomed.dia.fi.upm.es> wrote:
>>
>> Hi
>>
>> Im a developer and i was fixing a tool with the new api, but it uses the
>> old api and i have to return some thigs like it does, i have one question:
>> Is there any example result of the query,
>> http://rest.bioontology.org/bioportal/virtual/rootpath/1032/C3224?apikey=YourAPIK
>> <http://rest.bioontology.org/bioportal/virtual/rootpath/1032/C3224?apikey=YourAPIKey>, maked
>> with the old api???
>>
>> Regards,
>> Alejandro.
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>>
>>
>
>
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