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[bioontology-support] Bioportal Annotator
demetrios.sarantis at yale.edu
Mon Oct 13 10:45:07 PDT 2014
Are there any results/news for the annotation problem?
Some more examples:
text to be annotated select ontologies class(result)
INTERLEUKIN CYTO INTERFERON BETA-1A
LIGHT CYTO C-X-C MOTIF CHEMOKINE 11
INTERLEUKIN CYTO MACROPHAGE COLONY-STIMULATING FACTOR 1
CYTOKINES CYTO PLATELET-DERIVED GROWTH FACTOR
The result classes are not correct. The text to be annotated does not exist in classes' metadata.
From: Paul R Alexander [mailto:palexander at stanford.edu]
Sent: Friday, September 26, 2014 6:31 PM
To: Sarantis, Demetrios
Cc: NCBO User Support
Subject: Re: Bioportal Annotator
I've CCed the NCBO Support email list here. It's always a good idea to email that list with questions as there is a higher chance someone on the list will provide an answer.
As for your problem, it appears as though this is a bug on our end. I've submitted a ticket so that we can investigate the problem and we'll get back to you.
On Sep 25, 2014, at 9:39 AM, Sarantis, Demetrios <demetrios.sarantis at yale.edu<mailto:demetrios.sarantis at yale.edu>> wrote:
Could you please check this issue for me with the Annotator?
It produces results which seem not have any relation with the inserted text.
Another example is CD4 (see picture). It produces three results that do not contain CD4 in their metadata.
From: Sarantis, Demetrios
Sent: Monday, September 22, 2014 12:39 PM
To: 'Paul R Alexander'
Subject: Bioportal Annotator
I would like to ask you a basic question regarding the operation of bioportal annotator.
I insert in the text box IL-17, I select CYTO ontology and I press the button 'Get Annotations'.
The results are 2 classes:
None of them has IL-17 in its metadata (synonym etc.) Why has annotator produced those results? What is the annotation rationale?
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