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[bioontology-support] Question about NCBO annotator REST API

Ray Fergerson ray.fergerson at
Tue Apr 14 13:48:53 PDT 2015

The filter should be “ontologies={NCIT}” rather than “ontology”.


From: bioontology-support 
[mailto:bioontology-support-bounces at] On Behalf Of Qian 
Sent: Friday, April 10, 2015 7:02 AM
To: support at
Subject: [bioontology-support] Question about NCBO annotator REST API


We are trying to use NCBO annotator REST API to annotate medical text, but 
we are struggling how we can use specific ontologies to do annotation with 
the annotator API,! Even 
we add ontology parameter, for example "ontology=NCIT", the annotation 
result still contain the annotations with all available ontologies. Is there 
anything missing?




Qian Zhu, Ph.D.

Assistant Professor

Department of Information Systems

University of Maryland, Baltimore County (UMBC)

1000 Hilltop Circle, Baltimore, MD 21250, USA

Tel: 410-455-3943

Email: qianzhu at


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