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[bioontology-support] problems of Gazetteer

Ray Fergerson rayferg at stanford.edu
Tue Aug 25 10:43:57 PDT 2015


This is a known problem. The recent versions of GAZ do not parse with the most recent version on the OBO parser used by the OWL API. We have been and are continuing to look into this.

Ray

-----Original Message-----
From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Jie Zheng
Sent: Monday, August 24, 2015 1:26 PM
To: bioportal
Subject: [bioontology-support] problems of Gazetteer

Hi,

I am trying to annotate/search/view GAZ terms. None worked.

On the Gazetteer page, it shows error on the latest submission.
http://bioportal.bioontology.org/ontologies/GAZ
     $Revision: 1.512 $ (Uploaded, Error Rdf)

Besides, I cannot find matched terms by providing a term available in GAZ. For example, Zambia which is in GAZ with ID GAZ_00001107, but I cannot find it in GAZ using search or annotator.

Could you please check it?

Thanks,

Jie

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