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[bioontology-support] mappings in JSON output for the text annotator

Clement Jonquet jonquet at
Sat Jul 18 15:59:30 PDT 2015

I actually have a similar question as I cannot make the mapping expansion
work either on BioPortal or on local VA.

Can anyone provide insight about what's exactly happening with mapping
expansion in the Annotator?


-----Message d'origine-----
De : bioontology-support
[mailto:bioontology-support-bounces at] De la part de Marco
Envoyé : vendredi 17 juillet 2015 17:18
À : bioontology-support at
Objet : [bioontology-support] mappings in JSON output for the text annotator

Hi all,

I'm trying to add the equivalent of to our little Bioportal client
In the output I see  /[]/annotatedClass/, which is filled with useful
information, but then /[]/mappings, appears to be always empty, even when I
set 'mappings=all'. Is it supposed to contain something, and what (the same
as Why is there
/[]/mappings/annotatedClass/links/mappings too?

Thank you in advance for any help,


Marco Brandizi, PhD <brandizi at>,

Functional Genomics Group - Sr Software Engineer

European Bioinformatics Institute (EMBL-EBI) European Molecular Biology
Laboratory Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United

Office V2-26, Phone: +44 (0)1223 492 613, Fax: +44 (0)1223 492 620

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