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[bioontology-support] mappings in JSON output for the text annotator

Clement Jonquet jonquet at lirmm.fr
Sat Jul 18 15:59:30 PDT 2015


I actually have a similar question as I cannot make the mapping expansion
work either on BioPortal or on local VA.

Can anyone provide insight about what's exactly happening with mapping
expansion in the Annotator?

Bye
Clement

-----Message d'origine-----
De : bioontology-support
[mailto:bioontology-support-bounces at lists.stanford.edu] De la part de Marco
Brandizi
Envoyé : vendredi 17 juillet 2015 17:18
À : bioontology-support at mailman.stanford.edu
Objet : [bioontology-support] mappings in JSON output for the text annotator

Hi all,

I'm trying to add the equivalent of
http://data.bioontology.org/annotator to our little Bioportal client
(https://github.com/EBIBioSamples/bioportal-client).
In the output I see  /[]/annotatedClass/, which is filled with useful
information, but then /[]/mappings, appears to be always empty, even when I
set 'mappings=all'. Is it supposed to contain something, and what (the same
as http://data.bioontology.org/metadata/Mapping?)? Why is there
/[]/mappings/annotatedClass/links/mappings too?

Thank you in advance for any help,
Marco.

-- 

============================================================================
===
Marco Brandizi, PhD <brandizi at ebi.ac.uk>, http://www.marcobrandizi.info

Functional Genomics Group - Sr Software Engineer
http://www.ebi.ac.uk/microarray

European Bioinformatics Institute (EMBL-EBI) European Molecular Biology
Laboratory Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United
Kingdom

Office V2-26, Phone: +44 (0)1223 492 613, Fax: +44 (0)1223 492 620

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