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[bioontology-support] [BioPortal] Feedback from Rachel.Drysdale

Ray Fergerson ray.fergerson at stanford.edu
Fri Mar 6 14:47:00 PST 2015


Rachel,

We are looking into this. We have a validator that is supposed to print
out the reasons for the parse failure. Instead the validator itself is
failing on this ontology. No idea why. We will have an update next week.

Ray

-----Original Message-----
From: Rachel Drysdale [mailto:rdrysdale at plos.org]
Sent: Wednesday, March 4, 2015 9:28 AM
To: Ray Fergerson; support at bioontology.org
Cc: Rachel Drysdale
Subject: RE: [bioontology-support] [BioPortal] Feedback from
Rachel.Drysdale

Thanks Ray

I can now see the Project at
http://bioportal.bioontology.org/ontologies/PLOSTHES
which is great
But
In the Submissions section there is a "(Uploaded, Error Rdf)" statement.
I am new to this particular OWL format of export, and have not used it for
anything myself.
Is there perhaps an irregularity in the header structure/format?
I notice that the last row is
</rdf:RDF>
whereas there is no straightforward
<rdf:RDF>
at the top.
Is that a problem?

Cheers
Rachel


PLOS I OPEN FOR DISCOVERY
Rachel Drysdale Ph.D. I Taxonomy Manager
ORCID: 0000-0003-3037-0216
Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom
rdrysdale at plos.org I Main +44 (0) 1223-442810 plos.org I Facebook I
Twitter I Blog



-----Original Message-----
From: Ray Fergerson [mailto:ray.fergerson at stanford.edu]
Sent: 04 March 2015 01:45
To: support at bioontology.org; Rachel Drysdale
Subject: RE: [bioontology-support] [BioPortal] Feedback from
Rachel.Drysdale

Confirmed. We are looking into it.

Ray

-----Original Message-----
From: bioontology-support
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
support at bioontology.org
Sent: Monday, March 2, 2015 7:55 AM
To: support at bioontology.org; rdrysdale at plos.org
Subject: [bioontology-support] [BioPortal] Feedback from Rachel.Drysdale


Name: Rachel.Drysdale

Email: rdrysdale at plos.org

Location: http://bioportal.bioontology.org/

Comment:
rdrysdale at plos.org
I have (Feb 27th) submitted ""PLOS Thesaurus" but clicking on it (whether
from my account or after finding it via "Browse Ontologies" and browser
Find-In-Page produces, at bioportal.bioontology.org/ontologies/PLOSTHES,
"We're sorry but something
has gone wrong. We have been notified of this error."
Is this a transition phase thing or has something actually gone wrong with
what I posted?
Thanks for help/info.

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