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[bioontology-support] Webservice failure

Trish Whetzel plwhetzel at gmail.com
Fri Nov 6 14:04:57 PST 2015


Hi Janet,

I took a look at BioPortal and the RadLex term browser [1] in order to find
the name of this term (zone of kidney) since RID33423 was not matching
anything in the autocomplete suggestions for RadLex on BioPortal. When
using zone of kidney in the autocomplete, I was able to get to this page:
http://bioportal.bioontology.org/ontologies/RADLEX/?p=classes&conceptid=http%3A%2F%2Fwww.owl-ontologies.com%2FOntology1415135201.owl%23RID33423&jump_to_nav=true

It looks like the full IRI of the term is the ID value so in order for the
web service call to return results the full IRI is needed:
http://data.bioontology.org/ontologies/RADLEX/classes/http%3A%2F%2Fwww.owl-ontologies.com%2FOntology1415135201.owl%23RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label%2CprefLabel%2Csynonym%2Cdefinition%2Cobsolete%2CprefixIRI%2Cchildren%2Cproperties%2CchildrenCount

Trish
[1] http://www.radlex.org/



On Fri, Nov 6, 2015 at 11:58 AM, John Graybeal <jbgmeta1 at stanford.edu>
wrote:

> Hi Janet,
>
> I get the error (in my browser) "The input class id 'RID33423' is not a
> valid IRI.”  On initial look, a query to the classes doesn’t show a class
> RID33423 in RADLEX.  Is it possible this class ID is not correct or no
> longer active?
>
> john
>
>
> On Nov 6, 2015, at 11:20 AM, Janet Moery <jmoery at rsna.org> wrote:
>
> Our site RadLex.org <http://radlex.org/> makes API calls such as
> http://data.bioontology.org/ontologies/RADLEX/classes/RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label%2CprefLabel%2Csynonym%2Cdefinition%2Cobsolete%2CprefixIRI%2Cchildren%2Cproperties%2CchildrenCount
> <http://data.bioontology.org/ontologies/RADLEX/classes/RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label,prefLabel,synonym,definition,obsolete,prefixIRI,children,properties,childrenCount>
>  and that specific one has been failing without explanation.  Any
> guidance you can provide as to why will be greatly appreciated.
>
> Thank you for your time.
>
> Regards,
> Janet Moery
> Radiological Society of North America
> 820 Jorie Blvd, Oak Brook, IL 60523
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> FAX 1-630-571-7837
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>
> ========================
> John Graybeal
> Technical Program Manager
> Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
> 650-736-1632
> skype: graybealski
>
>
>
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