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[bioontology-support] Webservice failure

Trish Whetzel plwhetzel at gmail.com
Fri Nov 6 14:06:16 PST 2015


PS - the last 2 uploads of RadLex failed parsing at some point based on
this page:
http://bioportal.bioontology.org/ontologies/RADLEX

Trish


On Fri, Nov 6, 2015 at 2:04 PM, Trish Whetzel <plwhetzel at gmail.com> wrote:

> Hi Janet,
>
> I took a look at BioPortal and the RadLex term browser [1] in order to
> find the name of this term (zone of kidney) since RID33423 was not matching
> anything in the autocomplete suggestions for RadLex on BioPortal. When
> using zone of kidney in the autocomplete, I was able to get to this page:
>
> http://bioportal.bioontology.org/ontologies/RADLEX/?p=classes&conceptid=http%3A%2F%2Fwww.owl-ontologies.com%2FOntology1415135201.owl%23RID33423&jump_to_nav=true
>
> It looks like the full IRI of the term is the ID value so in order for the
> web service call to return results the full IRI is needed:
>
> http://data.bioontology.org/ontologies/RADLEX/classes/http%3A%2F%2Fwww.owl-ontologies.com%2FOntology1415135201.owl%23RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label%2CprefLabel%2Csynonym%2Cdefinition%2Cobsolete%2CprefixIRI%2Cchildren%2Cproperties%2CchildrenCount
>
> Trish
> [1] http://www.radlex.org/
>
>
>
> On Fri, Nov 6, 2015 at 11:58 AM, John Graybeal <jbgmeta1 at stanford.edu>
> wrote:
>
>> Hi Janet,
>>
>> I get the error (in my browser) "The input class id 'RID33423' is not a
>> valid IRI.”  On initial look, a query to the classes doesn’t show a class
>> RID33423 in RADLEX.  Is it possible this class ID is not correct or no
>> longer active?
>>
>> john
>>
>>
>> On Nov 6, 2015, at 11:20 AM, Janet Moery <jmoery at rsna.org> wrote:
>>
>> Our site RadLex.org <http://radlex.org/> makes API calls such as
>> http://data.bioontology.org/ontologies/RADLEX/classes/RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label%2CprefLabel%2Csynonym%2Cdefinition%2Cobsolete%2CprefixIRI%2Cchildren%2Cproperties%2CchildrenCount
>> <http://data.bioontology.org/ontologies/RADLEX/classes/RID33423?apikey=58bb5724-cad7-45ed-a949-5570fa89a01e&include=label,prefLabel,synonym,definition,obsolete,prefixIRI,children,properties,childrenCount>
>>  and that specific one has been failing without explanation.  Any
>> guidance you can provide as to why will be greatly appreciated.
>>
>> Thank you for your time.
>>
>> Regards,
>> Janet Moery
>> Radiological Society of North America
>> 820 Jorie Blvd, Oak Brook, IL 60523
>> TEL 1-630-571-2670
>> FAX 1-630-571-7837
>> RSNA.org <http://www.rsna.org/>
>>
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>>
>>
>> ========================
>> John Graybeal
>> Technical Program Manager
>> Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
>> Stanford Center for Biomedical Informatics Research
>> 650-736-1632
>> skype: graybealski
>>
>>
>>
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>>
>>
>
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