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[bioontology-support] [BioPortal] Feedback from Peter Kalchgruber

Michael Dorf mdorf at stanford.edu
Tue Nov 24 16:38:23 PST 2015


Hi Peter,

I've moved the ontology BCTT from being a view of BCTTV1 to a standalone ontology. You should now be able to see BCTT in search and browsing. Your username is set to administer this ontology.

Let me know if there are any further issues.

Thanks!

Michael


On Nov 24, 2015, at 14:43, Peter Kalchgruber <peter.kalchgruber at univie.ac.at<mailto:peter.kalchgruber at univie.ac.at>> wrote:

Hi Michael,

sorry, that was not on purpose.
Can you please remove the view or give me the rights to remove it by myself?
Please tell me, how can I upload an updated version of the ontology. The "submit a new submission"-button is still invisible.

Thank you for your help!

Peter

On Tue, Nov 24, 2015 at 9:03 PM Michael Dorf <mdorf at stanford.edu<mailto:mdorf at stanford.edu>> wrote:
Hi Peter,

It looks like this ontology was created as a "view" of a different ontology (Behaviour change technique taxonomy). You can see it here:

http://bioportal.bioontology.org/ontologies/BCTTV1

Was that done on purpose? Views are considered representations of existing ontologies, and they don't appear in places where an "ontology list" is displayed.

Thanks,

Michael



On Nov 24, 2015, at 04:40, Peter Kalchgruber <peter.kalchgruber at univie.ac.at<mailto:peter.kalchgruber at univie.ac.at>> wrote:

Hi Michael,

thank you for your fast answer and for fixing.
1.
I see, the parsing is done. But I sill can not find the ontology neither in the search<http://bioportal.bioontology.org/search> view nor browsing<http://bioportal.bioontology.org/ontologies>. If I click on class view of the ontology<http://bioportal.bioontology.org/ontologies/BCTT/?p=classes&conceptid=root> it seems so search for an infinite time.
I am unsure, if there went maybe something wrong?

2.
I think somehow I lost administration rights for the BCTT ontology<http://bioportal.bioontology.org/ontologies/BCTT>. Could you please give me the permission back?
User: univiepk

Thank you!

Best regards,
Peter Kalchgruber

On Tue, Nov 24, 2015 at 12:36 AM Michael Dorf <mdorf at stanford.edu<mailto:mdorf at stanford.edu>> wrote:
Hi Peter,

Apologies for the delay processing your ontology. The issue is now resolved and you can view and browse your ontology here:

http://bioportal.bioontology.org/ontologies/BCTT

Thank you for contributing to BioPortal!

Michael Dorf


On Nov 23, 2015, at 02:01, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: Peter Kalchgruber

Email: peter.kalchgruber at univie.ac.at<mailto:peter.kalchgruber at univie.ac.at>

Location: https://bioportal.bioontology.org/ontologies/BCTT

Feedback:

Hello,

Thank you for hosting such a great tool! I did want to participate and uploaded an ontology
https://bioportal.bioontology.org/ontologies/BCTT/
1. Unfortunately I can not add any more submissions at my created ontology. The button "add/edit submission" does not appear anymore with my account "univie".

2. The ontology has not been parsed so far. Is it normal, that parsing takes some days? Or is there something wrong?
I did also tried to validate my ontology with our validation form. It replied: "valid ontology".

Thank you so much for your help.

Best regards,
Peter Kalchgruber

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