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[bioontology-support] [BioPortal] Feedback from Mark Williams

Mark Williams mwilliam at ebi.ac.uk
Wed Nov 25 01:09:39 PST 2015


Thanks Michael.

Much appreciated.

Cheers,

Mark


On 24/11/2015 19:03, Michael Dorf wrote:
> Hi Mark,
>
> Thank you for reporting this issue. I've taken a look, there appear to 
> be two separate problems:
>
> 1. NCBI - the ontology is working properly, but the term Homo sapiens 
> does appear to be missing from our search index. I've kicked off a 
> reindexing process, but it does take some time for this process to 
> complete. If this doesn't solve the problem, there may be a deeper 
> issue to look into on our end. I've created a ticket in our bug 
> tracking system (NCBO-1578) that will track this issue. We'll try to 
> address it as soon as we can.
>
> 2. Mass Spectrometry ontology has a wrong pull location set to it, 
> pointing to a Github repo instead of the raw ontology file. We'll need 
> to either re-point it to a proper location or remove the 
> auto-download. A ticket has been created for this as well (NCBO-1579).
>
> We'll keep you posted once there are resolved.
>
> Thanks,
>
> Michael Dorf
>
>
>> On Nov 24, 2015, at 07:26, support at bioontology.org 
>> <mailto:support at bioontology.org> wrote:
>>
>> Name: Mark Williams
>>
>> Email: mwilliam at ebi.ac.uk <mailto:mwilliam at ebi.ac.uk>
>>
>> Location: http://bioportal.bioontology.org/search 
>> <http://bioportal.bioontology.org/search>
>>
>>
>> *Feedback:*
>>
>> Searching 'Homo sapiens' does not produce the NCBITAXON term anywhere 
>> in the results list.
>>
>> Also, searching for the term 'Electron ionization' does not show the 
>> term from the Mass spectrometry ontology.
>>
>>
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu 
>> <mailto:bioontology-support at lists.stanford.edu>
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>

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