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[bioontology-support] 504 Gateway Timeout for NCBITAXON

Richard Worrall richard at parachute.io
Fri Oct 9 03:21:19 PDT 2015


Hi Ray,

Thanks for looking at this, it was working shortly afterwards but appears to be failing again today. Would you let me know if there is a more preferable way to consume this taxonomy?

Many Thanks,
— Richard



On Friday, 2 October 2015 at 00:21, Ray Fergerson wrote:

> Confirmed that this is not working. We will look into it. We have had trouble with NCBITaxon in the past because it has 1M classes and some nodes have tons of subclasses that cause us problems.
>   
> Ray
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> From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Richard Worrall
> Sent: Thursday, October 1, 2015 4:44 AM
> To: support at bioontology.org (mailto:support at bioontology.org)
> Subject: [bioontology-support] 504 Gateway Timeout for NCBITAXON  
>   
> Hi Guys,  
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>   
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> I’m working on a project for Nature Publishing where we need to ingest the NCBITAXON ontology from the Bioportal API. I’ve been frequently running into 504 Gateway Timeout nginx errors when attempting to access URLs such as http://data.bioontology.org/ontologies/NCBITAXON/classes?page=1 — I just wondered whether this is an issue you’re aware of, or if there is any workaround that you can suggest?
>  
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> Thanks!
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>  
> --  
>  
> Richard Worrall
>  
> parachute.io (http://parachute.io)
>  
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