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[bioontology-support] [BioPortal] mapping returns empty result

Cui, Wenwu wcui at illumina.com
Tue Oct 13 15:57:42 PDT 2015


Hello,

I am trying to fetch the mappings between OMIM and HP. There are 216 pages, but after 60, all the pages are empty.

http://data.bioontology.org/mappings?ontologies=HP,OMIM&format=json&page=73&apikey=eb58a898-adef-4af0-a0ac-b65473d4e7ad&display_links=false&

Thanks!

Wenwu Cui PhD
Illumina Inc


From: Cui, Wenwu
Sent: Tuesday, October 06, 2015 3:22 PM
To: 'Ray Fergerson' <rayferg at stanford.edu>; support at bioontology.org
Subject: RE: [bioontology-support] [BioPortal] Feedback from biocomputing

Hi Ray,

I am trying to fetch the mappings between SNOMED and HP. There are 108 pages, but after 38, all the pages are empty.

http://data.bioontology.org/mappings?ontologies=HP,SNOMEDCT&format=json&page=45&apikey=eb58a898-adef-4af0-a0ac-b65473d4e7ad&display_links=false&

Can you check that out?

Thanks!

Wenwu Cui  PhD
Illumina Inc

From: Ray Fergerson [mailto:rayferg at stanford.edu]
Sent: Wednesday, September 23, 2015 5:52 PM
To: Cui, Wenwu <wcui at illumina.com<mailto:wcui at illumina.com>>; support at bioontology.org<mailto:support at bioontology.org>
Subject: RE: [bioontology-support] [BioPortal] Feedback from biocomputing

http://data.bioontology.org/mappings?ontologies=NCIT,FMA

Ray

From: Cui, Wenwu [mailto:wcui at illumina.com]
Sent: Wednesday, September 23, 2015 5:04 PM
To: Ray Fergerson; support at bioontology.org<mailto:support at bioontology.org>
Subject: RE: [bioontology-support] [BioPortal] Feedback from biocomputing

Hi Ray,

Thank you very much for your reply.

I got that URL from the sample page of bioportal. Can you give me a right one to retrieve mappings from 2 different ontologies?

I tried the ones on http://data.bioontology.org/documentation#Mapping but was unable to retrieve anything.

Thanks!

Wenwu


From: Ray Fergerson [mailto:rayferg at stanford.edu]
Sent: Wednesday, September 23, 2015 4:26 PM
To: support at bioontology.org<mailto:support at bioontology.org>; Cui, Wenwu <wcui at illumina.com<mailto:wcui at illumina.com>>
Subject: RE: [bioontology-support] [BioPortal] Feedback from biocomputing

Where did you get the URL below. It doesn’t look correct at all. Is this on our web site somewhere?

Documentation on the current way to get mappings is available at:
http://data.bioontology.org/documentation#Mapping

Ray

From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of support at bioontology.org<mailto:support at bioontology.org>
Sent: Tuesday, September 15, 2015 4:46 PM
To: support at bioontology.org<mailto:support at bioontology.org>; wcui at illumina.com<mailto:wcui at illumina.com>
Subject: [bioontology-support] [BioPortal] Feedback from biocomputing


Name: biocomputing

Email: wcui at illumina.com<mailto:wcui at illumina.com>

Location: http://bioportal.bioontology.org/ontologies

Feedback:

Dear Sir/Madam,

I am just wondering whether the mapping service is down.

I used the test URL from the sample but it generated a 'Not Found'

http://data.bioontology.org/documentation/bioportal/virtual/mappings/ontologies?sourceontology=1104&targetontology=3016&pagesize=10&pagenum=1&apikey=eb58a898-adef-4af0-a0ac-b65473d4e7ad

Thanks!

Wenwu
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