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[bioontology-support] BioPortal AMI
Alex Skrenchuk
alex.skrenchuk at stanford.edu
Thu Oct 15 17:32:42 PDT 2015
Hi Hyunsoo,
It looks like BioPortal Web UI can’t access backend (ontologies_api) running on the AMI. Would you please verify that the backend is running?
You can do so by going to the API which runs on port 8080.
You should see something like:
{
· -
"links": {
o "submissions": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/submissions"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/submissions>,
o "recommender_v1": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/recommender_v1"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/recommender_v1>,
o "provisional_classes": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/provisional_classes"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/provisional_classes>,
o "categories": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/categories"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/categories>,
o "slices": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/slices"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/slices>,
o "users": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/users"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/users>,
o "projects": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/projects"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/projects>,
o "metrics": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/metrics"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/metrics>,
o "ontologies": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/ontologies"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/ontologies>,
o "reviews": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/reviews"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/reviews>,
o "search": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/search"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/search>,
o "annotator": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/annotator"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/annotator>,
o "replies": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/replies"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/replies>,
o "documentation": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/documentation"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/documentation>,
o "mappings": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/mappings"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/mappings>,
o "resource_index": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/resource_index"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/resource_index>,
o "notes": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/notes"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/notes>,
o "groups": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/groups"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/groups>,
o "analytics": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/analytics"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/analytics>,
o "recommender": "http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/recommender"<http://ec2-54-144-108-88.compute-1.amazonaws.com:8080/recommender>,
o -
"@context": {
§ "submissions": "http://data.bioontology.org/metadata/OntologySubmission"<http://data.bioontology.org/metadata/OntologySubmission>,
§ "provisional_classes": "http://data.bioontology.org/metadata/ProvisionalClass"<http://data.bioontology.org/metadata/ProvisionalClass>,
§ "categories": "http://data.bioontology.org/metadata/Category"<http://data.bioontology.org/metadata/Category>,
§ "slices": "http://data.bioontology.org/metadata/Slice"<http://data.bioontology.org/metadata/Slice>,
§ "users": "http://data.bioontology.org/metadata/User"<http://data.bioontology.org/metadata/User>,
§ "projects": "http://data.bioontology.org/metadata/Project"<http://data.bioontology.org/metadata/Project>,
§ "metrics": "http://data.bioontology.org/metadata/Metrics"<http://data.bioontology.org/metadata/Metrics>,
§ "ontologies": "http://data.bioontology.org/metadata/Ontology"<http://data.bioontology.org/metadata/Ontology>,
§ "reviews": "http://data.bioontology.org/metadata/Review"<http://data.bioontology.org/metadata/Review>,
§ "replies": "http://data.bioontology.org/metadata/Reply"<http://data.bioontology.org/metadata/Reply>,
§ "mappings": "http://data.bioontology.org/metadata/Mapping"<http://data.bioontology.org/metadata/Mapping>,
§ "notes": "http://data.bioontology.org/metadata/Note"<http://data.bioontology.org/metadata/Note>,
§ "groups": "http://data.bioontology.org/metadata/Group"<http://data.bioontology.org/metadata/Group>
}
}
}
If you are getting an error then next step would be to restart BioPortal stack with bprestart command:
[ec2-user at ip-10-164-193-207 config]$ sudo /usr/local/bin/bprestart
Stopping ncbo_cron: [ OK ]
Stopping httpd: [ OK ]
Stopping memcached: [ OK ]
Stopping mysqld: [ OK ]
Stopping nginx: [ OK ]
Stopping unicorn: [ OK ]
[ OK ]
Stopping 4s-httpd: Stopping slaves:pidfile is 2458
[ OK ]
node_number hostname
0 localhost
store_name status
ontologies_api stopped
Stopping 4s-boss: [ OK ]
Stopping redis-server annotator: [ OK ]
Stopping redis-server goo_cache: [ OK ]
Stopping redis-server http_cache: [ OK ]
MSG-0001: mgrep is now in daemon mode, pid is 3235, all messages would be in file /var/log/message
[ OK ]
Starting mysqld: [ OK ]
Starting 4s-boss: [ OK ]
success 4s-boss is running
Starting 4s-httpd:Starting stores ontologies_apinode_number hostname
0 localhost
store_name status
ontologies_api running
[ OK ]
success 4s-httpd is running
Starting redis-server: [ OK ]
Starting redis-server: [ OK ]
Starting redis-server: [ OK ]
Starting unicorn:
Starting nginx: [ OK ]
Starting memcached: [ OK ]
Starting httpd: [ OK ]
Let me know if that resolves the problem.
-Alex
From: Kim, Hyunsoo [mailto:HKim at jcvi.org]
Sent: Monday, October 12, 2015 1:30 PM
To: Alex Skrenchuk <alex.skrenchuk at stanford.edu>
Cc: support at bioontology.org
Subject: Re: BioPortal AMI
Hi Alex,
1. I’m using m4.xlarge
2. I have not loaded any ontologies yet as I am having issues with accessing the homepage of Bioportal
3.
more /srv/ncbo/ontologies_api/current/log/production.log
127.0.0.1 - admin [12/Oct/2015:20:17:59 +0000] "PATCH /users/admin?apikey=1cfae05f-9e67-486f-820b-b39
3dec5764b HTTP/1.0" 204 - 1.5707
Thanks,
Hyunsoo
On Oct 9, 2015, at 9:13 PM, Alex Skrenchuk <alex.skrenchuk at stanford.edu<mailto:alex.skrenchuk at stanford.edu>> wrote:
Hi Kim,
Would you provide us more information on your NCBO Appliance AMI instance:
1. What instance size did you select for the AMI? Running NCBO Appliance on smaller instances such as m3.medium could be problematic.
2. Have you loaded any ontologies into the appliance?
3. Would you provide logs from the ontologies_api (/srv/ncbo/ontologies_api/current/log/production.log)
Thanks,
Alex
From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Kim, Hyunsoo
Sent: Friday, October 09, 2015 8:21 AM
To: support at bioontology.org<mailto:support at bioontology.org>
Subject: Re: [bioontology-support] BioPortal AMI
Hello,
I have not header anything about my inquiry yet so am resending it.
Thanks,
Hyunsoo
On Oct 5, 2015, at 1:53 PM, Kim, Hyunsoo <HKim at jcvi.org<mailto:HKim at jcvi.org>> wrote:
Hello,
I am testing the AWS AMI for NCBO Bioportal, and the initialization process went smoothly. However, every request to the ncbo service fails with following error:
Started GET "/ontologies" for 192.207.234.194 at 2015-10-05 17:46:55 +0000
Processing by OntologiesController#index as HTML
Completed 500 Internal Server Error in 0.5ms
URI::InvalidURIError (Problem retrieving:
http://<?xml<http://%3c/?xml> version="1.0" encoding="iso-8859-1"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>404 - Not Found</title>
</head>
<body>
<h1>404 - Not Found</h1>
</body>
</html>
:8080
Error: bad URI(is not URI?): http://<?xml<http://%3c/?xml> version="1.0" encoding="iso-8859-1"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>404 - Not Found</title>
</head>
<body>
<h1>404 - Not Found</h1>
</body>
</html>
:8080
/usr/share/ruby/2.1/uri/common.rb:176:in `split'
/usr/share/ruby/2.1/uri/common.rb:211:in `parse'
/usr/share/ruby/2.1/uri/common.rb:747:in `parse'
/usr/share/ruby/2.1/uri/common.rb:1232:in `URI'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday/utils.rb:246:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday/utils.rb:246:in `URI'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday/connection.rb:309:in `url_prefix='
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday/connection.rb:77:in `initialize'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday.rb:70:in `new'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/faraday-0.9.1/lib/faraday.rb:70:in `new'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/config.rb:39:in `config_connection'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/http.rb:48:in `conn'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/http.rb:63:in `get'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/collection.rb:28:in `top_level_links'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/collection.rb:43:in `entry_point'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/bundler/gems/ontologies_api_ruby_client-dd22b45c3ade/lib/ontologies_api_client/collection.rb:56:in `all'
/srv/rails/BioPortal/releases/bioportal_web_ui/app/controllers/ontologies_controller.rb:45:in `index'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/implicit_render.rb:4:in `send_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/abstract_controller/base.rb:167:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/rendering.rb:10:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/abstract_controller/callbacks.rb:18:in `block in process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:458:in `_run__3587100991550631146__process_action__963253783299443448__callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:405:in `__run_callback'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:385:in `_run_process_action_callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:81:in `run_callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/abstract_controller/callbacks.rb:17:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/rescue.rb:29:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/instrumentation.rb:30:in `block in process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/notifications.rb:123:in `block in instrument'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/notifications/instrumenter.rb:20:in `instrument'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/notifications.rb:123:in `instrument'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/instrumentation.rb:29:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/params_wrapper.rb:207:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activerecord-3.2.21/lib/active_record/railties/controller_runtime.rb:18:in `process_action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/abstract_controller/base.rb:121:in `process'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/abstract_controller/rendering.rb:45:in `process'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-mini-profiler-0.9.3/lib/mini_profiler/profiling_methods.rb:77:in `block in profile_method'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal.rb:203:in `dispatch'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal/rack_delegation.rb:14:in `dispatch'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_controller/metal.rb:246:in `block in action'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/routing/route_set.rb:73:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/routing/route_set.rb:73:in `dispatch'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/routing/route_set.rb:36:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/journey-1.0.4/lib/journey/router.rb:68:in `block in call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/journey-1.0.4/lib/journey/router.rb:56:in `each'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/journey-1.0.4/lib/journey/router.rb:56:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/routing/route_set.rb:608:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/best_standards_support.rb:17:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/etag.rb:23:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/conditionalget.rb:25:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/head.rb:14:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/params_parser.rb:21:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/flash.rb:242:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/session/abstract/id.rb:210:in `context'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/session/abstract/id.rb:205:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/cookies.rb:341:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activerecord-3.2.21/lib/active_record/query_cache.rb:64:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activerecord-3.2.21/lib/active_record/connection_adapters/abstract/connection_pool.rb:479:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/callbacks.rb:28:in `block in call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:405:in `_run__2477054876280584018__call__3884238363076606039__callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:405:in `__run_callback'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:385:in `_run_call_callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/callbacks.rb:81:in `run_callbacks'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/callbacks.rb:27:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/remote_ip.rb:31:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/debug_exceptions.rb:16:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/show_exceptions.rb:56:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/rack/logger.rb:32:in `call_app'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/rack/logger.rb:16:in `block in call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/tagged_logging.rb:22:in `tagged'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/rack/logger.rb:16:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/actionpack-3.2.21/lib/action_dispatch/middleware/request_id.rb:22:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/methodoverride.rb:21:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/runtime.rb:17:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/activesupport-3.2.21/lib/active_support/cache/strategy/local_cache.rb:72:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-1.4.5/lib/rack/lock.rb:15:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-cache-1.2/lib/rack/cache/context.rb:136:in `forward'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-cache-1.2/lib/rack/cache/context.rb:245:in `fetch'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-cache-1.2/lib/rack/cache/context.rb:185:in `lookup'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-cache-1.2/lib/rack/cache/context.rb:66:in `call!'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-cache-1.2/lib/rack/cache/context.rb:51:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/rack-mini-profiler-0.9.3/lib/mini_profiler/profiler.rb:167:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/engine.rb:484:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/application.rb:231:in `call'
/srv/rails/BioPortal/releases/bioportal_web_ui/vendor/bundle/ruby/2.1/gems/railties-3.2.21/lib/rails/railtie/configurable.rb:30:in `method_missing'
/usr/local/share/ruby/gems/2.1/gems/passenger-4.0.57/lib/phusion_passenger/rack/thread_handler_extension.rb:74:in `process_request'
/usr/local/share/ruby/gems/2.1/gems/passenger-4.0.57/lib/phusion_passenger/request_handler/thread_handler.rb:141:in `accept_and_process_next_request'
/usr/local/share/ruby/gems/2.1/gems/passenger-4.0.57/lib/phusion_passenger/request_handler/thread_handler.rb:109:in `main_loop'
/usr/local/share/ruby/gems/2.1/gems/passenger-4.0.57/lib/phusion_passenger/request_handler.rb:455:in `block (3 levels) in start_threads'):
app/controllers/ontologies_controller.rb:45:in `index'
The page displays "We're sorry but something has gone wrong. We have been notified of this error.” message for the error. Where should I look into to fix this issue? Is there any detailed HOWTO guide for the AMI and services?
Additionally, how could I obtain the vmware virtual appliance? My BioPortal account is ‘hkim500’.
Thanks,
Hyunsoo
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