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[bioontology-support] How to use REST API to search for only ICD9 code for a term?

Ray Fergerson rayferg at stanford.edu
Fri Oct 30 14:35:11 PDT 2015


I believe the format is "ontologies=XXX" even if there is only one. Perhaps not great English but...

Ray

From: bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Boshu Ru
Sent: Friday, October 30, 2015 12:26 PM
To: support at bioontology.org
Subject: [bioontology-support] How to use REST API to search for only ICD9 code for a term?

Hi,

When I search term 'Laceration' with ontology limited to ICD9CM on bioportal.bioontology.org<http://bioportal.bioontology.org> (link below),

http://bioportal.bioontology.org/search?q=Laceration&ontologies=ICD9CM&include_properties=false&include_views=false&includeObsolete=false&require_definition=false&exact_match=false&categories=

I received information like below, from the return message I could get an ICD9 code 620.6.
Broad ligament laceration syndrome - International Classification of Diseases, Version 9 - Clinical Modification (ICD9CM)<http://bioportal.bioontology.org/ontologies/ICD9CM?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FICD9CM%2F620.6>
http://purl.bioontology.org/ontology/ICD9CM/620.6
details<http://bioportal.bioontology.org/ajax/class_details?ontology=ICD9CM&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FICD9CM%2F620.6&styled=false> - visualize - 149 more from this ontology<http://bioportal.bioontology.org/search?q=Laceration&ontologies=ICD9CM&include_properties=false&include_views=false&includeObsolete=false&require_definition=false&exact_match=false&categories=#additional_ont_results>

But when I use REST API, by submitting an URL below (API Key part is omitted)
http://data.bioontology.org/search?q=Laceration&ontology=ICD9CM

I got a json file WITHOUT any ICD9 code at all.

So my question is, how to use REST API to get ICD9 code for a term like Laceration?

Thanks ahead for your help.

Best regards,
-Boshu Ru


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