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[bioontology-support] Parsing error!

sridevi polavaram spolavar at gmail.com
Fri Sep 18 07:53:08 PDT 2015


Hi Jennifer,
 I think i have a sense of why the synonyms are not working. I think,
oboInOwl:hasExactSynonym property is not parsed and hence all the asserted
exact synonyms are not coming through in the auto-complete. However,
oboInOwl:hasExactSynonym property seem to be working fine!

Thank you
Sridevi

On Thu, Sep 17, 2015 at 10:16 PM, sridevi polavaram <spolavar at gmail.com>
wrote:

> Hi Jennifer,
>  I see the tree is being displayed now. It was strange, i got rdf label
> error, then, the tree wasn't displaying labels, it finally is working now
> after two days. But i for some reason the autocomplete is very slow, and
> also the synonyms are not being pulled in the autocomplete as i type. Do
> you think this can be fixed?
>
> Thanks
> Sridevi
>
> On Thu, Sep 17, 2015 at 8:09 PM, Jennifer Leigh Vendetti <
> vendetti at stanford.edu> wrote:
>
>> Hello Sridevi,
>>
>>
>> On Sep 16, 2015, at 12:53 PM, sridevi polavaram <spolavar at gmail.com>
>> wrote:
>>
>> Hi Ray,
>>  I have uploaded a new ontology of brain regions to bioportal at
>> http://bioportal.bioontology.org/ontologies/NMOBR
>>
>> But the parsing didn't go through. Can you please help me figure out what
>> is going on here? I am able to open this file and test in protege 4.3.
>>
>>
>>
>> I looked at your ontology in BioPortal.  The summary page (
>> http://bioportal.bioontology.org/ontologies/NMOBR) indicates that the
>> latest submission parsed.  I also clicked the link for submission 0.1 and
>> the class tree displays without errors.  Could you be more specific about
>> what you mean by the parsing not going through?
>>
>> Best,
>> Jennifer
>>
>>
>
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