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[bioontology-support] How to handle imported ontologies on bioportal

sridevi polavaram spolavar at gmail.com
Mon Sep 21 14:03:26 PDT 2015


Got it! Would locally imported ontologies make auto complete search faster
than Web imported ones?
Thank you
Sridevi
On Sep 21, 2015 1:59 PM, "Jennifer Leigh Vendetti" <vendetti at stanford.edu>
wrote:

> Hello Sridevi,
>
> If you want to upload an ontology with local imports, you need to create a
> ZIP file that contains your main ontology file, along with all of the
> imported ontology files.  In addition, your ZIP file must have the same
> name as the main ontology file so that BioPortal knows which ontology is
> the one you’re trying to upload.  For example:
>
> my_ontology.zip (the ZIP file you create with the same name as your main
> ontology file)
> - my_ontology.owl (the main ontology file)
> - imported_ontology_1.owl
> - imported_ontology_2.owl
> - imported_ontology_3.owl
>
> … etc.
>
> Jennifer
>
>
>
> On Sep 17, 2015, at 11:57 AM, sridevi polavaram <spolavar at gmail.com>
> wrote:
>
> Hi All,
>  I need some guidance on how to upload ontologies that import from local
> files. Because, I believe my recent upload (
> http://bioportal.bioontology.org/ontologies/NMOBR) didn't work due to
> imported ontologies.
>
>  Should i upload all local ontologies together? Instead of referring to
> local files i even tried importing directly from bioportal (e.g.,  http://purl.bioontology.org/ontology/NMOSP
> ) <http://purl.bioontology.org/ontology/NMOSP> but got an error!
>
> I would appreciate if you can provide some examples in this regard.
>
> Thank you
> Sridevi
>
>
> On Wed, Sep 16, 2015 at 3:53 PM, sridevi polavaram <spolavar at gmail.com>
> wrote:
>
>> Hi Ray,
>>  I have uploaded a new ontology of brain regions to bioportal at
>> http://bioportal.bioontology.org/ontologies/NMOBR
>>
>> But the parsing didn't go through. Can you please help me figure out what
>> is going on here? I am able to open this file and test in protege 4.3.
>>
>> Thank you
>> Sridevi
>>
>>
>
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>
>
>
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