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[bioontology-support] Weird behavior in BioPortal for parsing of comment and Definition

Hervé MENAGER herve.menager at pasteur.fr
Fri Apr 15 07:04:44 PDT 2016


Hello,
I'm writing to ask about a weird behavior in BioPortal when exploring the EDAM ontology (though it might not be limited to EDAM). When parsing http://edamontology.org/format_3244  in BioPortal, the comment is concatenated to the definition. See source below, and compare with BioPortal "definition" field in the UI, there: 
http://bioportal.bioontology.org/ontologies/EDAM?p=classes&conceptid=format_3244
Can you help me with this?
Thank you.
Best regards,
Hervé Ménager


<owl:Class rdf:about="http://edamontology.org/format_3244">     <rdfs:label>mzML</rdfs:label>     <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2332"/>     <rdfs:subClassOf rdf:resource="http://edamontology.org/format_3245"/>     <rdfs:comment>mzML is the successor and unifier of the mzData format developed by PSI and mzXML developed at the Seattle Proteome Center.</rdfs:comment>     <created_in>1.2</created_in>     <oboInOwl:hasDefinition>mzML format for raw spectrometer output data, standardised by HUPO PSI MSS.</oboInOwl:hasDefinition>     <documentation rdf:resource="http://psidev.info/mzml"/>     <oboInOwl:hasDbXref rdf:resource="http://psidev.info/mzml"/>     <oboInOwl:inSubset rdf:resource="&oboOther;edam#edam"/>     <oboInOwl:inSubset rdf:resource="&oboOther;edam#formats"/> </owl:Class>             

Note to EDAM developers: this is follow up on the issue #75: 
https://github.com/edamontology/edamontology/issues/75



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