Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] "Error Rdf" message for PRotein Ontology (& other issues)

Jennifer Leigh Vendetti vendetti at stanford.edu
Tue Apr 26 18:05:10 PDT 2016


Hello Darren,

I’m not sure where you’re getting that screenshot from?  When I looked at the Protein Ontology in BioPortal today (http://bioportal.bioontology.org/ontologies/PR), it shows 48.0. as the latest submission, not 45.0:


[cid:5294A97A-F1D9-4844-B0E2-2E11523E3A81 at hsd1.ca.comcast.net]


Jennifer


On Jun 30, 2015, at 1:50 PM, Darren Natale <dan5 at georgetown.edu<mailto:dan5 at georgetown.edu>> wrote:

Dear Bioportalogists,

For the current release of PRO (upload date 6/24/2015) and for the one previous (upload date 5/15/2015) there is an "Error Rdf" message indicated (image attached). Can you provide any additional information as to what causes such a message? We would like to resolve any issues that might be arising on our end.

Additional issues:

1) The current release is mistakenly indicated as 45. It is actually 46. I believe that I can correct it, but last time I attempted to do so it resulted in...

2) ...release 41 (upload date 6/12/2014) somehow getting tagged with the number 45. This happened when I updated the URL for downloading the reasoned version of PRO. At the same time, I was asked to indicate the current version number, which was 45.

3) The release date shown for that same release is 4/13/2014. It isn't clear to me how that is determined, as it corresponds neither to the upload date nor the date given in the release itself (5/27/2014) nor the datestamp on the ftp site (6/02/2014).

4) Combined, all of the above has resulted in three releases given the number 45. It should be:

Submission  Release      Upload
46.0        06/24/2015   06/24/2015
45.0        05/15/2015   05/15/2015
41.0        06/12/2014   06/12/2014

(the Upload date is correct on the website in all cases)
<PR-bioportal.jpg>_______________________________________________
bioontology-support mailing list
bioontology-support at lists.stanford.edu<mailto:bioontology-support at lists.stanford.edu>
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20160427/d29a2729/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Screenshot 2016-04-26 18.03.12.png
Type: image/png
Size: 51672 bytes
Desc: Screenshot 2016-04-26 18.03.12.png
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20160427/d29a2729/attachment-0001.png>


More information about the bioontology-support mailing list