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[bioontology-support] [BioPortal] Feedback from Nick Felicelli

John Graybeal jgraybeal at
Mon Aug 15 17:41:51 PDT 2016

Hello Nick,

The latest BTO ontology failed to parse correctly, and BioPortal is not falling back to the previous submission. I tried opening the most recent BTO submission with Protege, and it failed with a "string out of bounds error". I will contact the ontology owner to see if a new ontology may be available.

This is partly affected by a systematic issue that our development team can diagnose more thoroughly later this week, so rather than attempt a stop-gap solution, I'd like to wait until they can devote some time to it.

Please contact me offline if you have an urgent need for these results, and we can explore options.


On Aug 15, 2016, at 12:09 PM, support at<mailto:support at> wrote:

Name: Nick Felicelli



It seems that the BTO ontology is not working. For any search I am not able to get any data out of it. Load the following url and click search to see the no results


bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
skype: graybealski

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