Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] [BioPortal] Feedback from Nick Felicelli

Felicelli, Nicholas (Nick) Nicholas.Felicelli at
Wed Aug 17 06:36:03 PDT 2016

Thanks for the info.


From: John Graybeal <jgraybeal at>
Date: Monday, August 15, 2016 at 8:41 PM
To: "<support at>" <support at>, "Felicelli, Nicholas (Nick)" <Nicholas.Felicelli at>
Subject: Re: [bioontology-support] [BioPortal] Feedback from Nick Felicelli

Hello Nick,

The latest BTO ontology failed to parse correctly, and BioPortal is not falling back to the previous submission. I tried opening the most recent BTO submission with Protege, and it failed with a "string out of bounds error". I will contact the ontology owner to see if a new ontology may be available.

This is partly affected by a systematic issue that our development team can diagnose more thoroughly later this week, so rather than attempt a stop-gap solution, I'd like to wait until they can devote some time to it.

Please contact me offline if you have an urgent need for these results, and we can explore options.


On Aug 15, 2016, at 12:09 PM, support at<mailto:support at> wrote:

Name: Nick Felicelli

It seems that the BTO ontology is not working. For any search I am not able to get any data out of it. Load the following url and click search to see the no results

bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
skype: graybealski

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <>

More information about the bioontology-support mailing list