Search Mailing List Archives
[bioontology-support] Partial index of search results for ontology
mdorf at stanford.edu
Thu Aug 18 18:18:09 PDT 2016
I've looked into your submission, and there are definitely several components of the processing of GRID ontology that are questionable. When opening this ontology in Protege, it appears that most of the entities inside are individuals, with only 9 entities identified as "classes". Because our metrics calculation reports only 9 classes, our downstream processing (search being one of them) fails to index the entire contents of the ontology.
While Protege and our internal metrics data are consistent (9 classes and 63216 individuals), our classes endpoint appears to display the individuals as classes, so there seems to be an inconsistency in the way we treat this ontology's content:
Our parsing expert engineer is on vacation until next Monday. When she's back, we both will continue looking into this problem.
The good news is I was able to tweak our indexing code internally and re-index the GRID ontology in a way that would include all classes/individuals. The search that was previously failing now works:
Hopefully this will allow you to complete your demo. I'll keep you posted on the rest of the issues.
On Aug 18, 2016, at 13:21, Simon Porter <s.porter at digital-science.com<mailto:s.porter at digital-science.com>> wrote:
Hi I'm having a problem with the autocomplete/search results of the portal
I have submitted an ontology: http://data.bioontology.org/ontologies/GRID<http://data.bioontology.org/ontologies/GRID/classes/http%3A%2F%2Fwww.grid.ac%2Finstitutes%2Fgrid.452594.b>
however, only some results are appearing in search results
the main problem I have is that only a small amount of classes are appearing in the search results.
for instance: http://data.bioontology.org/ontologies/GRID/classes/http%3A%2F%2Fwww.grid.ac%2Finstitutes%2Fgrid.452594.b exists
but it doesn't show up in the search (widget example below), but it is also the case for the search api
any help appreciated!
VP Academic Relations and Knowledge Architecture
e: s.porter at digital-science.com<mailto:s.porter at digital-science.com>
m: +44 7976 942 068
P.S. Got an idea for scientific research software? Apply for our Catalyst Grant<https://www.digital-science.com/investment/catalyst-grant/>!
Digital Science & Research Solutions Limited | Registered in England and Wales number 09984464 | Registered Office The Campus, 4 Crinan Street, London, N1 9XW
This e-mail is confidential and should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage mechanism. Neither Digital Science & Research Solutions Limited nor any of its agents accept liability for any statements made which are clearly the sender's own and not expressly made on behalf of Digital Science & Research Solutions Limited or one of its agents. Please note that neither Digital Science & Research Solutions Limited nor any of its agents accept any responsibility for viruses that may be contained in this e-mail or its attachments and it is your responsibility to scan the e-mail and any attachments. No contracts may be concluded on behalf of Digital Science & Research Solutions Limited or its agents by means of e-mail communication.
bioontology-support mailing list
bioontology-support at lists.stanford.edu<mailto:bioontology-support at lists.stanford.edu>
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the bioontology-support