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[bioontology-support] searching for synonyms (was: How to handle imported ontologies on bioportal)

sridevi polavaram spolavar at gmail.com
Wed Feb 10 15:28:59 PST 2016


Any updates on issue NCBO-1605 - can't search NMOSP by synonym?

Thank you
Sridevi


On Tue, Jan 19, 2016 at 11:47 PM, sridevi polavaram <spolavar at gmail.com>
wrote:

> Thank you, Mike. see inline below.
>
>
>> 2. The issue with NMOSP still stands. It is tracked internally as
>> NCBO-1605 - can't search NMOSP by synonym. Even after having deployed the
>> patch and re-parsing/re-indexing the ontology, I am unable to get any hits
>> on "chimpanzee" or "common chimpanzee". This means that even after
>> re-indexing, these values did not get picked up as "synonyms" of the
>> concept "Pan troglodytes":
>>
>>
>> http://data.bioontology.org/search?q=Pan%20troglodytes&ontologies=NMOSP&exact_match=true
>>
>>
>> http://data.bioontology.org/search?q=common%20chimpanzee&ontologies=NMOSP&exact_match=true
>>
>>
>> We will continue looking into the issue and update you as more details
>> become available.
>>
>>
> For now, I will be using only two properties for synonyms in my owl
> ontologies:
> http://www.geneontology.org/formats/oboInOWL#hasExactSynonym
> http://www.geneontology.org/formats/oboInOWL#hasRelatedSynonym
>
> It is really strange that the synonym defined as these two properties were
> working fine with NMOSP before! I will keep my fingers crossed.
>
> Thank you
> Sridevi
>
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