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[bioontology-support] issues with ontology visualization

Michael Dorf mdorf at
Tue Feb 16 15:10:52 PST 2016

Hi Sridevi,

I don't see any issues with NMOBR other than some of the terms repeat in the tree. Is this the issue you are referring to?



On Feb 16, 2016, at 11:36, sridevi polavaram <spolavar at<mailto:spolavar at>> wrote:

Hi John,
 I have uploaded two new ontologies yesterday, the insect hierarchy and the vertebrate hierarchy. but only the insect hierarchy works (, i am having issues with the second one ( May i know what is the problem?

Thank you,

On Wed, Feb 10, 2016 at 6:28 PM, sridevi polavaram <spolavar at<mailto:spolavar at>> wrote:
Any updates on issue NCBO-1605 - can't search NMOSP by synonym?

Thank you

On Tue, Jan 19, 2016 at 11:47 PM, sridevi polavaram <spolavar at<mailto:spolavar at>> wrote:
Thank you, Mike. see inline below.

2. The issue with NMOSP still stands. It is tracked internally as NCBO-1605 - can't search NMOSP by synonym. Even after having deployed the patch and re-parsing/re-indexing the ontology, I am unable to get any hits on "chimpanzee" or "common chimpanzee". This means that even after re-indexing, these values did not get picked up as "synonyms" of the concept "Pan troglodytes":

We will continue looking into the issue and update you as more details become available.

For now, I will be using only two properties for synonyms in my owl ontologies:

It is really strange that the synonym defined as these two properties were working fine with NMOSP before! I will keep my fingers crossed.

Thank you

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