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[bioontology-support] NCBO Tree widget: collapsing/expanding the hierarchy

Allyson Lister allyson.lister at oerc.ox.ac.uk
Wed Feb 17 11:18:02 PST 2016


Hi Jennifer,

So sorry I didn't reply - I thought I had done! Thanks for pointing out
that, indeed, the two values returned are different, and the additional
property value. I'm sure that, between these two things, we will have what
we need.

Thanks again! :) Allyson

On Thu, 4 Feb 2016 at 00:51 Jennifer Leigh Vendetti <vendetti at stanford.edu>
wrote:

> Hi Allyson,
>
>
> On Feb 2, 2016, at 1:00 AM, Allyson Lister <allyson.lister at oerc.ox.ac.uk>
> wrote:
>
> Thanks - it is all looking great for me now - the updated code has been
> installed on BioSharing.
>
>
>
> OK, glad to hear that the tree widget is working for you.
>
>
>
> One additional note (which I'm happy to turn into an additional ticket if
> you prefer) is that the information returned from a query on an ontology
> present as a Summary Only on BioPortal is identical to the info returned
> for an unknown record, e.g.:
>
> A record which does not exist:
>
> {
>     -"errors": [
>         "Ontology 'ZZZ' not found."
>     ],
>     "status": 404
> }
>
> And a record which does exist as a summary only on bioportal:
>
> {
>     -"errors": [
>         "Ontology PHARMGKB submission not found."
>     ],
>     "status": 404
> }
>
> We would like to treat these two cases differently - is there any way to
> get a different error message when the record is present, but as a summary
> only?
>
>
>
> Sorry, but I’m not sure I totally follow here.  The status codes returned
> are the same, but the error messages are different.
>
> On a related note, ontologies in BioPortal have a  “summaryOnly”
> property.  I’m wondering if you’ve considered the approach of checking this
> property value to determine if you should proceed with subsequent calls?
>
> Jennifer
>
>
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